Gossypium barbadense (gossypium_barbadense)

This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Download candidate protein FASTA for this species

Pathway Coverage

6 Pathways

Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%

Family Distribution

9305 Family-Level Calls

C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%

Other Families 62.3%

More Families (98)

UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Pathway-Level Records	Detected Families	Top family	Results
Terpenoid pathway	1055	21	BAHD (388)	View species results
Alkaloid pathway	824	25	7DLGT (140)	View species results
Phenylpropanoid pathway	824	12	POD (325)	View species results
Flavonoid pathway	411	13	UFGT (256)	View species results
Rosmarinic acid pathway	307	7	C4H (123)	View species results
Steroid pathway	224	12	CAS (104)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Detected families	Assignment calls	Included families
P450/oxygenase	24	3759	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	675	BAHD, HCT, RAS

Identification Result List

Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: BAHD

Protein/Isoform Record	Pathway	Family	Confidence	Status	Best Target
GbarD02G0015740	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
GbarD02G0016790	Terpenoid	BAHD	medium	pass	BAHD__00033__sp_P0DXG0_AT_STRYX
GbarD02G0016810	Terpenoid	BAHD	medium	pass	BAHD__00032__sp_P0DO84_AT_STRNX
GbarD02G0019040	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
GbarD02G0021700	Terpenoid	BAHD	low	borderline	BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF
GbarD02G0022190	Terpenoid	BAHD	medium	pass	BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
GbarD02G0022900	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
GbarD02G0022920	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
GbarD02G0025070	Terpenoid	BAHD	medium	pass	BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
GbarD03G0000400	Terpenoid	BAHD	medium	pass	BAHD__00051__sp_Q7XA86_ZDH11_ARATH
GbarD03G0006570	Terpenoid	BAHD	medium	pass	BAHD__00049__sp_Q5PNZ1_ZDH21_ARATH
GbarD03G0008560	Terpenoid	BAHD	medium	pass	BAHD__00085__sp_Q9M1K5_ZDH13_ARATH
GbarD03G0008990	Terpenoid	BAHD	low	borderline	BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
GbarD03G0015780	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
GbarD03G0016280	Terpenoid	BAHD	medium	pass	BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
GbarD03G0019400	Terpenoid	BAHD	medium	pass	BAHD__00034__sp_P10349_GPAT2_CUCMO
GbarD04G0000640	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
GbarD04G0000670	Terpenoid	BAHD	low	borderline	BAHD__00024__sp_O23393_BIA1_ARATH
GbarD04G0004460	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
GbarD04G0006630	Terpenoid	BAHD	medium	pass	BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
GbarD04G0006970	Terpenoid	BAHD	low	borderline	BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarD04G0007220	Terpenoid	BAHD	medium	pass	BAHD__00002__sp_A0A068BIF1_AT9_ACTER
GbarD04G0007720	Terpenoid	BAHD	medium	pass	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
GbarD04G0008750	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
GbarD04G0008760	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
GbarD04G0009140	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
GbarD04G0010360	Terpenoid	BAHD	low	borderline	BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
GbarD04G0014200	Terpenoid	BAHD	medium	pass	BAHD__00073__sp_Q9FF86_DCR_ARATH
GbarD04G0014260	Terpenoid	BAHD	medium	pass	BAHD__00027__sp_O80437_GPAT6_ARATH
GbarD04G0015600	Terpenoid	BAHD	medium	pass	BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
GbarD04G0015740	Terpenoid	BAHD	low	borderline	BAHD__00047__sp_Q5KS41_WSD11_ARATH
GbarD04G0015750	Terpenoid	BAHD	low	borderline	BAHD__00047__sp_Q5KS41_WSD11_ARATH
GbarD04G0016390	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarD04G0016400	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarD04G0016460	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH
GbarD04G0018610	Terpenoid	BAHD	medium	pass	BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
GbarD04G0020170	Terpenoid	BAHD	medium	pass	BAHD__00032__sp_P0DO84_AT_STRNX
GbarD04G0021040	Terpenoid	BAHD	medium	pass	BAHD__00068__sp_Q9C533_ZDHC1_ARATH
GbarD05G0005410	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarD05G0005430	Terpenoid	BAHD	low	borderline	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarD05G0005480	Terpenoid	BAHD	medium	pass	BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
GbarD05G0005530	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarD05G0005900	Terpenoid	BAHD	medium	pass	BAHD__00095__sp_Q9SZ58_BRAT1_ARATH
GbarD05G0007520	Terpenoid	BAHD	low	borderline	BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
GbarD05G0007710	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
GbarD05G0011730	Terpenoid	BAHD	medium	pass	BAHD__00012__sp_A1XWY7_CFAT_PETHY
GbarD05G0011740	Terpenoid	BAHD	medium	pass	BAHD__00012__sp_A1XWY7_CFAT_PETHY
GbarD05G0011750	Terpenoid	BAHD	medium	pass	BAHD__00012__sp_A1XWY7_CFAT_PETHY
GbarD05G0011870	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
GbarD05G0013940	Terpenoid	BAHD	low	borderline	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH