PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
GbarD10G0001830 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD10G0001840 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD10G0004450 Steroid CAS medium pass CAS__00006__sp_Q2XPU6_CAS1_RICCO
GbarD10G0018230 Steroid CAS medium pass CAS__00008__sp_Q6BE25_CAS1_CUCPE
GbarD10G0022230 Steroid CAS medium pass CAS__00008__sp_Q6BE25_CAS1_CUCPE
GbarD11G0009630 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GbarD11G0009640 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GbarD11G0013110 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD11G0031770 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD11G0031830 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD11G0034050 Steroid CAS low borderline CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD13G0011000 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GbarD13G0011910 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GbarD13G0013920 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD13G0013960 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD13G0016250 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD13G0016260 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
GbarD13G0019520 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GbarD13G0019540 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
GbarD13G0023470 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
Gbarscaffold418_obj0004860 Steroid CAS medium pass CAS__00014__sp_Q9SXV6_CAS1_GLYGL