Gossypium barbadense (gossypium_barbadense)
Imported from atlas release summary for Gossypium barbadense.
3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3645
Candidate Genes
C4H
6.96%
C3'H/CYP98A
6.11%
BAHD
5.39%
CYP76
4.07%
IFS
4.05%
T3O
3.86%
F3H
3.63%
POD
3.61%
Other Families
62.3%
More Families (98)
UGT
316
3.4%
4CL
315
3.39%
7DLGT
282
3.03%
UFGT
276
2.97%
NMT
204
2.19%
DWF4/CYP90B1
192
2.06%
BR6OX2/CYP85A2
185
1.99%
CODM/T6ODM
177
1.9%
F3'H/CYP75B
169
1.82%
H6H
166
1.78%
STR
166
1.78%
CAD
135
1.45%
LAC
134
1.44%
CYP71
126
1.35%
CAS
121
1.3%
CYP90D1
116
1.25%
TRI/TRII
114
1.23%
SMT1/SMT2/SMT3
113
1.21%
TPS
105
1.13%
GES
100
1.07%
HCT
95
1.02%
CSE
93
1.0%
GS
86
0.92%
COMT
84
0.9%
7DLH
82
0.88%
RAS
78
0.84%
T16H
74
0.8%
IFR
67
0.72%
PYKS
64
0.69%
G8O/G8H
63
0.68%
IO
63
0.68%
16OMT
61
0.66%
F3'5'H/CYP75A
61
0.66%
F5H/CYP84A
57
0.61%
BBE
56
0.6%
ANR
53
0.57%
NCS
51
0.55%
SGD
50
0.54%
FNS
50
0.54%
CPD/CYP90A1
50
0.54%
CCR
46
0.49%
COR
45
0.48%
TAT
45
0.48%
PMT
44
0.47%
ROT3/CYP90C1
41
0.44%
CYP51G1
40
0.43%
PAL
39
0.42%
SLS
37
0.4%
BR6OX1/CYP85A1
37
0.4%
GGPPS
29
0.31%
8HGO
27
0.29%
CNMT
27
0.29%
DFR
27
0.29%
ANS/LDOX
26
0.28%
SQE
26
0.28%
LAMT
23
0.25%
FPPS
22
0.24%
MPO
20
0.21%
CPR
20
0.21%
CHS
18
0.19%
CCoAOMT
17
0.18%
SQS/FDFT1
17
0.18%
ISY
16
0.17%
CYP719
15
0.16%
SMO1/SMO2
15
0.16%
TYDC_DDC
14
0.15%
HMGR
14
0.15%
CYP80B1
13
0.14%
AACT
13
0.14%
DXS
13
0.14%
HPPR
12
0.13%
MVD
12
0.13%
DET2
11
0.12%
MVK
11
0.12%
TDC
10
0.11%
HMGS
9
0.1%
CHI
8
0.09%
ADC
7
0.08%
MCT/IspD
7
0.08%
CYP80F1
6
0.06%
FLS
6
0.06%
HDR/IspH
6
0.06%
DXR
6
0.06%
ODC
5
0.05%
6OMT_4OMT_SOMT
5
0.05%
XMT_MXMT_DXMT
5
0.05%
DWF1
5
0.05%
DWF5
5
0.05%
MDS/IspF
5
0.05%
CPI1
3
0.03%
HYD1
3
0.03%
FK
2
0.02%
DWF7
2
0.02%
CMK/IspE
2
0.02%
HDS/IspG
2
0.02%
IDI
2
0.02%
GPPS
2
0.02%
PMK
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1055 | 21 | BAHD (388) | View species results |
| Alkaloid pathway | 824 | 25 | 7DLGT (140) | View species results |
| Phenylpropanoid pathway | 824 | 12 | POD (325) | View species results |
| Flavonoid pathway | 411 | 13 | UFGT (256) | View species results |
| Rosmarinic acid pathway | 307 | 7 | C4H (123) | View species results |
| Steroid pathway | 224 | 12 | CAS (104) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3759 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 675 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| GbarA01G0006250 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| GbarA01G0006260 | Terpenoid | CYP76 | medium | pass | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| GbarA01G0011560 | Terpenoid | CYP76 | medium | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| GbarA01G0017490 | Terpenoid | CYP76 | low | borderline | CYP76__00018__sp_Q69X58_C76M7_ORYSJ |
| GbarA01G0021190 | Terpenoid | CYP76 | medium | borderline | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| GbarA01G0021200 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA01G0021210 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA01G0021420 | Terpenoid | CYP76 | medium | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| GbarA02G0002470 | Terpenoid | CYP76 | low | borderline | CYP76__00023__sp_S4UX02_CYPH1_SALMI |
| GbarA02G0002500 | Terpenoid | CYP76 | low | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| GbarA02G0002540 | Terpenoid | CYP76 | low | borderline | CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF |
| GbarA02G0006960 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA02G0009000 | Terpenoid | CYP76 | medium | pass | CYP76__00013__sp_D1MI46_C76BA_SWEMU |
| GbarA02G0009030 | Terpenoid | CYP76 | medium | borderline | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| GbarA02G0010880 | Terpenoid | CYP76 | low | borderline | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| GbarA02G0013670 | Terpenoid | CYP76 | medium | pass | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| GbarA02G0016010 | Terpenoid | CYP76 | medium | pass | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| GbarA02G0016480 | Terpenoid | CYP76 | medium | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| GbarA03G0001930 | Terpenoid | CYP76 | medium | pass | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| GbarA03G0001940 | Terpenoid | CYP76 | medium | pass | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| GbarA03G0001950 | Terpenoid | CYP76 | medium | pass | CYP76__00008__sp_A0A1D8QMG4_C76K8_ROSOF |
| GbarA03G0001970 | Terpenoid | CYP76 | medium | pass | CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM |
| GbarA03G0001980 | Terpenoid | CYP76 | medium | borderline | CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM |
| GbarA03G0008940 | Terpenoid | CYP76 | medium | borderline | CYP76__00015__sp_P0DKI2_C76AN_BETVU |
| GbarA03G0008970 | Terpenoid | CYP76 | medium | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| GbarA03G0012330 | Terpenoid | CYP76 | medium | pass | CYP76__00023__sp_S4UX02_CYPH1_SALMI |
| GbarA03G0013510 | Terpenoid | CYP76 | low | borderline | CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI |
| GbarA03G0017580 | Terpenoid | CYP76 | low | borderline | CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT |
| GbarA04G0001870 | Terpenoid | CYP76 | medium | pass | CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM |
| GbarA04G0001900 | Terpenoid | CYP76 | medium | pass | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| GbarA04G0001920 | Terpenoid | CYP76 | medium | borderline | CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM |
| GbarA04G0008480 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA04G0008490 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA04G0015670 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA04G0015680 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA04G0016830 | Terpenoid | CYP76 | medium | pass | CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU |
| GbarA04G0017450 | Terpenoid | CYP76 | low | borderline | CYP76__00003__sp_A0A0S1TPC7_C76K6_SALPM |
| GbarA04G0017460 | Terpenoid | CYP76 | low | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| GbarA05G0004200 | Terpenoid | CYP76 | low | borderline | CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ |
| GbarA05G0006910 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA05G0011040 | Terpenoid | CYP76 | low | borderline | CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU |
| GbarA05G0011620 | Terpenoid | CYP76 | low | borderline | CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT |
| GbarA05G0019760 | Terpenoid | CYP76 | low | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA05G0019770 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA05G0019780 | Terpenoid | CYP76 | medium | pass | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA05G0019810 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA05G0019820 | Terpenoid | CYP76 | medium | borderline | CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC |
| GbarA05G0019830 | Terpenoid | CYP76 | medium | borderline | CYP76__00025__sp_W8JIS5_IO_CATRO |
| GbarA05G0020760 | Terpenoid | CYP76 | medium | pass | CYP76__00022__sp_Q8VWZ7_C76B6_CATRO |
| GbarA05G0020770 | Terpenoid | CYP76 | medium | borderline | CYP76__00013__sp_D1MI46_C76BA_SWEMU |