PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%
Family Distribution
C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%
Other Families 62.3%
More Families (98)
UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
GbarA07G0011540 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GbarA07G0015670 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
GbarA08G0002850 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GbarA08G0006100 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
GbarA08G0014850 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
GbarA08G0018970 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
GbarA08G0020840 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GbarA08G0021860 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
GbarA08G0024690 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
GbarA09G0005570 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
GbarA09G0008090 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
GbarA09G0010610 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GbarA09G0012810 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
GbarA09G0022910 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarA09G0024680 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarA09G0024900 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
GbarA09G0025160 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
GbarA09G0025960 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
GbarA10G0000600 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
GbarA10G0009170 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
GbarA10G0009630 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
GbarA10G0014780 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
GbarA10G0017910 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
GbarA10G0019490 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
GbarA10G0019590 Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
GbarA10G0020880 Alkaloid NMT medium pass NMT__00011__sp_A9X7L0_ANMT_RUTGR
GbarA11G0013870 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
GbarA11G0018130 Alkaloid NMT medium borderline NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
GbarA11G0020340 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
GbarA11G0022220 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarA11G0024810 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
GbarA11G0025470 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
GbarA11G0028020 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarA11G0034840 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
GbarA12G0006330 Alkaloid NMT medium borderline NMT__00043__sp_Q8H0D2_DXMT1_COFAR
GbarA12G0012830 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
GbarA12G0013360 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
GbarA12G0013370 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
GbarA12G0014110 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
GbarA12G0017090 Alkaloid NMT low borderline NMT__00030__sp_Q43088_RBCMT_PEA
GbarA12G0021360 Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
GbarA12G0023390 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
GbarA12G0026160 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
GbarA12G0026980 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
GbarA12G0028530 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarA12G0028950 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
GbarA13G0000380 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
GbarA13G0006560 Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH
GbarA13G0012210 Alkaloid NMT medium pass NMT__00048__sp_Q8W595_SUVR4_ARATH
GbarA13G0018470 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE