PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.94% Alkaloid pathway 22.61% Phenylpropanoid pathway 22.61% Flavonoid pathway 11.28% Rosmarinic acid pathway 8.42% Steroid pathway 6.15%
Family Distribution
C4H 6.96% C3'H/CYP98A 6.11% BAHD 5.39% CYP76 4.07% IFS 4.05% T3O 3.86% F3H 3.63% POD 3.61%
Other Families 62.3%
More Families (98)
UGT 316 3.4% 4CL 315 3.39% 7DLGT 282 3.03% UFGT 276 2.97% NMT 204 2.19% DWF4/CYP90B1 192 2.06% BR6OX2/CYP85A2 185 1.99% CODM/T6ODM 177 1.9% F3'H/CYP75B 169 1.82% H6H 166 1.78% STR 166 1.78% CAD 135 1.45% LAC 134 1.44% CYP71 126 1.35% CAS 121 1.3% CYP90D1 116 1.25% TRI/TRII 114 1.23% SMT1/SMT2/SMT3 113 1.21% TPS 105 1.13% GES 100 1.07% HCT 95 1.02% CSE 93 1.0% GS 86 0.92% COMT 84 0.9% 7DLH 82 0.88% RAS 78 0.84% T16H 74 0.8% IFR 67 0.72% PYKS 64 0.69% G8O/G8H 63 0.68% IO 63 0.68% 16OMT 61 0.66% F3'5'H/CYP75A 61 0.66% F5H/CYP84A 57 0.61% BBE 56 0.6% ANR 53 0.57% NCS 51 0.55% SGD 50 0.54% FNS 50 0.54% CPD/CYP90A1 50 0.54% CCR 46 0.49% COR 45 0.48% TAT 45 0.48% PMT 44 0.47% ROT3/CYP90C1 41 0.44% CYP51G1 40 0.43% PAL 39 0.42% SLS 37 0.4% BR6OX1/CYP85A1 37 0.4% GGPPS 29 0.31% 8HGO 27 0.29% CNMT 27 0.29% DFR 27 0.29% ANS/LDOX 26 0.28% SQE 26 0.28% LAMT 23 0.25% FPPS 22 0.24% MPO 20 0.21% CPR 20 0.21% CHS 18 0.19% CCoAOMT 17 0.18% SQS/FDFT1 17 0.18% ISY 16 0.17% CYP719 15 0.16% SMO1/SMO2 15 0.16% TYDC_DDC 14 0.15% HMGR 14 0.15% CYP80B1 13 0.14% AACT 13 0.14% DXS 13 0.14% HPPR 12 0.13% MVD 12 0.13% DET2 11 0.12% MVK 11 0.12% TDC 10 0.11% HMGS 9 0.1% CHI 8 0.09% ADC 7 0.08% MCT/IspD 7 0.08% CYP80F1 6 0.06% FLS 6 0.06% HDR/IspH 6 0.06% DXR 6 0.06% ODC 5 0.05% 6OMT_4OMT_SOMT 5 0.05% XMT_MXMT_DXMT 5 0.05% DWF1 5 0.05% DWF5 5 0.05% MDS/IspF 5 0.05% CPI1 3 0.03% HYD1 3 0.03% FK 2 0.02% DWF7 2 0.02% CMK/IspE 2 0.02% HDS/IspG 2 0.02% IDI 2 0.02% GPPS 2 0.02% PMK 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
GbarA13G0019010 Alkaloid NMT medium pass NMT__00011__sp_A9X7L0_ANMT_RUTGR
GbarA13G0023430 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
GbarA13G0024170 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
GbarA13G0024180 Alkaloid NMT medium borderline NMT__00010__sp_A4GE70_DXMT1_COFCA
GbarD01G0001470 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
GbarD01G0002470 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
GbarD01G0002500 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
GbarD01G0017270 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarD01G0020260 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
GbarD01G0020270 Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
GbarD01G0021800 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
GbarD01G0023700 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GbarD01G0023710 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GbarD02G0004210 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarD02G0007860 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
GbarD02G0010500 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
GbarD02G0013310 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
GbarD02G0013860 Alkaloid NMT medium pass NMT__00068__sp_Q9XI84_RBCMT_ARATH
GbarD02G0014680 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarD02G0015160 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarD02G0019080 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
GbarD02G0020310 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
GbarD03G0000880 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH
GbarD03G0001800 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
GbarD03G0001810 Alkaloid NMT medium pass NMT__00021__sp_O64827_SUVR5_ARATH
GbarD03G0005820 Alkaloid NMT medium borderline NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
GbarD03G0010150 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarD03G0012080 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
GbarD03G0013180 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
GbarD03G0018280 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarD04G0000210 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
GbarD04G0001980 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
GbarD04G0007550 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
GbarD04G0011910 Alkaloid NMT medium borderline NMT__00062__sp_Q9SCP7_NAMT1_ARATH
GbarD04G0016550 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
GbarD05G0001950 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
GbarD05G0002940 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarD05G0018630 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
GbarD05G0024000 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
GbarD05G0025790 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
GbarD05G0028750 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
GbarD05G0028970 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
GbarD05G0029890 Alkaloid NMT low borderline NMT__00023__sp_O82210_ANM12_ARATH
GbarD05G0035500 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
GbarD06G0000600 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
GbarD06G0004210 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
GbarD06G0007450 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
GbarD06G0008980 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
GbarD06G0012630 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
GbarD06G0013150 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH