Gossypium barbadense (gossypium_barbadense)
Imported from atlas release summary for Gossypium barbadense.
3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3645
Candidate Genes
C4H
6.96%
C3'H/CYP98A
6.11%
BAHD
5.39%
CYP76
4.07%
IFS
4.05%
T3O
3.86%
F3H
3.63%
POD
3.61%
Other Families
62.3%
More Families (98)
UGT
316
3.4%
4CL
315
3.39%
7DLGT
282
3.03%
UFGT
276
2.97%
NMT
204
2.19%
DWF4/CYP90B1
192
2.06%
BR6OX2/CYP85A2
185
1.99%
CODM/T6ODM
177
1.9%
F3'H/CYP75B
169
1.82%
H6H
166
1.78%
STR
166
1.78%
CAD
135
1.45%
LAC
134
1.44%
CYP71
126
1.35%
CAS
121
1.3%
CYP90D1
116
1.25%
TRI/TRII
114
1.23%
SMT1/SMT2/SMT3
113
1.21%
TPS
105
1.13%
GES
100
1.07%
HCT
95
1.02%
CSE
93
1.0%
GS
86
0.92%
COMT
84
0.9%
7DLH
82
0.88%
RAS
78
0.84%
T16H
74
0.8%
IFR
67
0.72%
PYKS
64
0.69%
G8O/G8H
63
0.68%
IO
63
0.68%
16OMT
61
0.66%
F3'5'H/CYP75A
61
0.66%
F5H/CYP84A
57
0.61%
BBE
56
0.6%
ANR
53
0.57%
NCS
51
0.55%
SGD
50
0.54%
FNS
50
0.54%
CPD/CYP90A1
50
0.54%
CCR
46
0.49%
COR
45
0.48%
TAT
45
0.48%
PMT
44
0.47%
ROT3/CYP90C1
41
0.44%
CYP51G1
40
0.43%
PAL
39
0.42%
SLS
37
0.4%
BR6OX1/CYP85A1
37
0.4%
GGPPS
29
0.31%
8HGO
27
0.29%
CNMT
27
0.29%
DFR
27
0.29%
ANS/LDOX
26
0.28%
SQE
26
0.28%
LAMT
23
0.25%
FPPS
22
0.24%
MPO
20
0.21%
CPR
20
0.21%
CHS
18
0.19%
CCoAOMT
17
0.18%
SQS/FDFT1
17
0.18%
ISY
16
0.17%
CYP719
15
0.16%
SMO1/SMO2
15
0.16%
TYDC_DDC
14
0.15%
HMGR
14
0.15%
CYP80B1
13
0.14%
AACT
13
0.14%
DXS
13
0.14%
HPPR
12
0.13%
MVD
12
0.13%
DET2
11
0.12%
MVK
11
0.12%
TDC
10
0.11%
HMGS
9
0.1%
CHI
8
0.09%
ADC
7
0.08%
MCT/IspD
7
0.08%
CYP80F1
6
0.06%
FLS
6
0.06%
HDR/IspH
6
0.06%
DXR
6
0.06%
ODC
5
0.05%
6OMT_4OMT_SOMT
5
0.05%
XMT_MXMT_DXMT
5
0.05%
DWF1
5
0.05%
DWF5
5
0.05%
MDS/IspF
5
0.05%
CPI1
3
0.03%
HYD1
3
0.03%
FK
2
0.02%
DWF7
2
0.02%
CMK/IspE
2
0.02%
HDS/IspG
2
0.02%
IDI
2
0.02%
GPPS
2
0.02%
PMK
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1055 | 21 | BAHD (388) | View species results |
| Alkaloid pathway | 824 | 25 | 7DLGT (140) | View species results |
| Phenylpropanoid pathway | 824 | 12 | POD (325) | View species results |
| Flavonoid pathway | 411 | 13 | UFGT (256) | View species results |
| Rosmarinic acid pathway | 307 | 7 | C4H (123) | View species results |
| Steroid pathway | 224 | 12 | CAS (104) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3759 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 675 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| GbarA08G0017540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0000210 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0000220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0009710 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA09G0011870 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA09G0012550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0012840 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0013220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0014810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0015440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA09G0022300 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA09G0022340 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA09G0022810 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA10G0006600 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA10G0006610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA10G0007810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA10G0019230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA10G0022550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0021370 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0021380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0022100 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0024100 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA11G0034030 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA11G0037120 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA12G0017650 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA12G0019100 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA12G0022170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA12G0029050 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA13G0011220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA13G0020610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarA13G0021920 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarA13G0025950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0005070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0005220 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD01G0005340 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD01G0006350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0013940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0014250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0015490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0017470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0022050 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD01G0022550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD01G0024330 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD02G0013060 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD02G0021560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD02G0021580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD03G0000300 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD03G0000310 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| GbarD03G0006150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| GbarD03G0007280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |