PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
GbarA04G0017410 Alkaloid 7DLGT low borderline
GbarA04G0017420 Alkaloid 7DLGT low borderline
GbarA05G0003130 Alkaloid 7DLGT low borderline
GbarA05G0003140 Alkaloid 7DLGT low borderline
GbarA05G0003210 Alkaloid 7DLGT low borderline
GbarA05G0004920 Alkaloid 7DLGT low borderline
GbarA05G0006890 Alkaloid 7DLGT low borderline
GbarA05G0006900 Alkaloid 7DLGT low borderline
GbarA05G0010970 Alkaloid 7DLGT medium pass
GbarA05G0022550 Alkaloid 7DLGT high pass
GbarA05G0030980 Alkaloid 7DLGT high pass
GbarA05G0031600 Alkaloid 7DLGT medium pass
GbarA05G0034030 Alkaloid 7DLGT medium pass
GbarA05G0036540 Alkaloid 7DLGT high pass
GbarA05G0036560 Alkaloid 7DLGT medium pass
GbarA05G0039010 Alkaloid 7DLGT low borderline
GbarA05G0039200 Alkaloid 7DLGT medium pass
GbarA05G0042830 Alkaloid 7DLGT low borderline
GbarA05G0042840 Alkaloid 7DLGT low borderline
GbarA05G0042850 Alkaloid 7DLGT low borderline
GbarA06G0002040 Alkaloid 7DLGT medium pass
GbarA06G0003170 Alkaloid 7DLGT low borderline
GbarA06G0006000 Alkaloid 7DLGT low borderline
GbarA06G0021720 Alkaloid 7DLGT low borderline
GbarA06G0022870 Alkaloid 7DLGT low borderline
GbarA07G0008090 Alkaloid 7DLGT low borderline
GbarA07G0011060 Alkaloid 7DLGT medium pass
GbarA07G0011070 Alkaloid 7DLGT medium pass
GbarA07G0011120 Alkaloid 7DLGT high pass
GbarA07G0011130 Alkaloid 7DLGT low borderline
GbarA07G0011150 Alkaloid 7DLGT medium pass
GbarA07G0011160 Alkaloid 7DLGT medium pass
GbarA07G0011840 Alkaloid 7DLGT low borderline
GbarA07G0015050 Alkaloid 7DLGT medium pass
GbarA07G0020440 Alkaloid 7DLGT medium pass
GbarA07G0020580 Alkaloid 7DLGT medium pass
GbarA07G0022210 Alkaloid 7DLGT low borderline
GbarA07G0024890 Alkaloid 7DLGT low borderline
GbarA07G0024900 Alkaloid 7DLGT medium pass
GbarA07G0024920 Alkaloid 7DLGT medium pass
GbarA07G0025280 Alkaloid 7DLGT medium pass
GbarA07G0025290 Alkaloid 7DLGT medium pass
GbarA08G0008350 Alkaloid 7DLGT low borderline
GbarA08G0009730 Alkaloid 7DLGT low borderline
GbarA09G0001020 Alkaloid 7DLGT low borderline
GbarA09G0016110 Alkaloid 7DLGT low borderline
GbarA09G0016120 Alkaloid 7DLGT medium pass
GbarA09G0019790 Alkaloid 7DLGT medium pass
GbarA09G0022720 Alkaloid 7DLGT low borderline
GbarA09G0022730 Alkaloid 7DLGT low borderline