PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

4400
Candidate Protein Records
3645
Pathway-Level Records
9305
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GbarA05G0001970 Alkaloid PYKS low borderline
GbarA05G0009930 Alkaloid PYKS low borderline
GbarA05G0019320 Alkaloid PYKS low borderline
GbarA05G0024110 Alkaloid PYKS medium pass
GbarA05G0024120 Alkaloid PYKS high pass
GbarA05G0024130 Alkaloid PYKS high pass
GbarA05G0032780 Alkaloid PYKS high pass
GbarA05G0037180 Alkaloid PYKS low borderline
GbarA06G0006380 Alkaloid PYKS low borderline
GbarA06G0019310 Alkaloid PYKS low borderline
GbarA07G0010460 Alkaloid PYKS low borderline
GbarA07G0014570 Alkaloid PYKS low borderline
GbarA08G0014810 Alkaloid PYKS low borderline
GbarA08G0016430 Alkaloid PYKS high pass
GbarA08G0027340 Alkaloid PYKS low borderline
GbarA09G0000010 Alkaloid PYKS high pass
GbarA09G0000020 Alkaloid PYKS high pass
GbarA09G0000080 Alkaloid PYKS high pass
GbarA09G0007550 Alkaloid PYKS low borderline
GbarA09G0021170 Alkaloid PYKS low borderline
GbarA09G0024220 Alkaloid PYKS low borderline
GbarA10G0012730 Alkaloid PYKS low borderline
GbarA10G0023490 Alkaloid PYKS low borderline
GbarA12G0003870 Alkaloid PYKS high pass
GbarA12G0013200 Alkaloid PYKS low borderline
GbarA13G0021770 Alkaloid PYKS low borderline
GbarD01G0021060 Alkaloid PYKS low borderline
GbarD02G0002950 Alkaloid PYKS high pass
GbarD02G0009740 Alkaloid PYKS low borderline
GbarD02G0018430 Alkaloid PYKS low borderline
GbarD02G0023650 Alkaloid PYKS low borderline
GbarD04G0006290 Alkaloid PYKS low borderline
GbarD05G0002000 Alkaloid PYKS low borderline
GbarD05G0009800 Alkaloid PYKS low borderline
GbarD05G0019710 Alkaloid PYKS low borderline
GbarD05G0024190 Alkaloid PYKS high pass
GbarD05G0024320 Alkaloid PYKS high pass
GbarD05G0033030 Alkaloid PYKS high pass
GbarD06G0006090 Alkaloid PYKS low borderline
GbarD06G0008760 Alkaloid PYKS low borderline
GbarD06G0019580 Alkaloid PYKS low borderline
GbarD07G0010330 Alkaloid PYKS low borderline
GbarD07G0014500 Alkaloid PYKS low borderline
GbarD08G0015050 Alkaloid PYKS low borderline
GbarD08G0016560 Alkaloid PYKS high pass
GbarD08G0027300 Alkaloid PYKS low borderline
GbarD09G0006980 Alkaloid PYKS low borderline
GbarD09G0020520 Alkaloid PYKS low borderline
GbarD09G0023620 Alkaloid PYKS low borderline
GbarD10G0015680 Alkaloid PYKS high pass