PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

4400
Candidate Protein Records
3645
Pathway-Level Records
9305
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GbarD11G0003300 Alkaloid TRI/TRII medium pass
GbarD11G0003310 Alkaloid TRI/TRII medium pass
GbarD11G0009310 Alkaloid TRI/TRII low borderline
GbarD11G0011420 Alkaloid TRI/TRII medium pass
GbarD11G0012640 Alkaloid TRI/TRII medium pass
GbarD11G0029270 Alkaloid TRI/TRII medium pass
GbarD11G0029280 Alkaloid TRI/TRII medium pass
GbarD11G0036650 Alkaloid TRI/TRII medium pass
GbarD12G0004750 Alkaloid TRI/TRII medium pass
GbarD12G0016750 Alkaloid TRI/TRII low borderline
GbarD13G0001430 Alkaloid TRI/TRII medium pass
GbarD13G0003850 Alkaloid TRI/TRII low borderline
GbarD13G0009700 Alkaloid TRI/TRII medium pass
GbarD13G0010110 Alkaloid TRI/TRII medium pass
GbarD13G0025350 Alkaloid TRI/TRII medium pass
GbarD13G0025360 Alkaloid TRI/TRII medium pass
GbarD13G0025390 Alkaloid TRI/TRII medium pass
GbarD13G0025400 Alkaloid TRI/TRII medium pass
GbarA01G0001630 Alkaloid TYDC_DDC medium borderline
GbarA01G0001640 Alkaloid TYDC_DDC medium borderline
GbarA05G0007310 Alkaloid TYDC_DDC low borderline
GbarA07G0007900 Alkaloid TYDC_DDC medium borderline
GbarA07G0016680 Alkaloid TYDC_DDC medium borderline
GbarA10G0019840 Alkaloid TYDC_DDC medium borderline
GbarA10G0019850 Alkaloid TYDC_DDC medium borderline
GbarA13G0019340 Alkaloid TYDC_DDC medium borderline
GbarD01G0001530 Alkaloid TYDC_DDC medium borderline
GbarD07G0007920 Alkaloid TYDC_DDC medium borderline
GbarD07G0016670 Alkaloid TYDC_DDC medium borderline
GbarD10G0020860 Alkaloid TYDC_DDC medium borderline
GbarD13G0018930 Alkaloid TYDC_DDC medium borderline
GbarD13G0018970 Alkaloid TYDC_DDC medium borderline
GbarA09G0003390 Alkaloid XMT_MXMT_DXMT medium borderline
GbarD07G0014590 Alkaloid XMT_MXMT_DXMT low borderline
GbarD10G0020520 Alkaloid XMT_MXMT_DXMT medium borderline
GbarD10G0020580 Alkaloid XMT_MXMT_DXMT medium borderline
Gbarscaffold40501_obj_D090004570 Alkaloid XMT_MXMT_DXMT medium pass