PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Protein/Isoform Record Pathway Family Confidence Status
GhirA01G0000340.1 Alkaloid H6H medium borderline
GhirA01G0000650.1 Alkaloid H6H medium borderline
GhirA01G0003810.1 Alkaloid H6H low borderline
GhirA01G0003810.2 Alkaloid H6H low borderline
GhirA01G0003810.3 Alkaloid H6H low borderline
GhirA01G0003820.1 Alkaloid H6H low borderline
GhirA01G0003840.1 Alkaloid H6H low borderline
GhirA01G0023560.1 Alkaloid H6H low borderline
GhirA02G0004330.2 Alkaloid H6H medium borderline
GhirA02G0004370.1 Alkaloid H6H low borderline
GhirA02G0004370.2 Alkaloid H6H low borderline
GhirA02G0004380.1 Alkaloid H6H medium borderline
GhirA02G0004390.2 Alkaloid H6H low borderline
GhirA02G0013410.1 Alkaloid H6H low borderline
GhirA02G0013830.1 Alkaloid H6H low borderline
GhirA02G0014170.1 Alkaloid H6H low borderline
GhirA02G0017560.1 Alkaloid H6H low borderline
GhirA04G0002950.1 Alkaloid H6H low borderline
GhirA04G0002960.1 Alkaloid H6H low borderline
GhirA04G0002970.1 Alkaloid H6H low borderline
GhirA04G0002980.1 Alkaloid H6H low borderline
GhirA04G0002990.1 Alkaloid H6H low borderline
GhirA04G0003000.1 Alkaloid H6H low borderline
GhirA04G0003010.1 Alkaloid H6H low borderline
GhirA04G0003030.1 Alkaloid H6H low borderline
GhirA04G0009400.1 Alkaloid H6H medium borderline
GhirA05G0014040.1 Alkaloid H6H low borderline
GhirA05G0014040.2 Alkaloid H6H low borderline
GhirA05G0018470.1 Alkaloid H6H medium borderline
GhirA05G0025320.1 Alkaloid H6H medium pass
GhirA05G0042370.1 Alkaloid H6H medium borderline
GhirA05G0042370.2 Alkaloid H6H medium borderline
GhirA05G0042380.1 Alkaloid H6H medium borderline
GhirA06G0008420.1 Alkaloid H6H low borderline
GhirA06G0015290.1 Alkaloid H6H low borderline
GhirA06G0016990.1 Alkaloid H6H medium borderline
GhirA07G0009780.1 Alkaloid H6H medium borderline
GhirA07G0014690.1 Alkaloid H6H low borderline
GhirA07G0020780.1 Alkaloid H6H low borderline
GhirA07G0023990.1 Alkaloid H6H medium borderline
GhirA07G0024000.1 Alkaloid H6H medium borderline
GhirA08G0004880.1 Alkaloid H6H low borderline
GhirA08G0007050.1 Alkaloid H6H medium borderline
GhirA08G0010300.1 Alkaloid H6H low borderline
GhirA08G0012790.1 Alkaloid H6H medium borderline
GhirA08G0018770.1 Alkaloid H6H low borderline
GhirA08G0021160.1 Alkaloid H6H medium borderline
GhirA08G0021170.1 Alkaloid H6H medium pass
GhirA08G0021180.1 Alkaloid H6H medium borderline
GhirA08G0021180.2 Alkaloid H6H medium borderline