PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD06G0003860.1 Alkaloid 8HGO medium borderline
GhirD06G0003860.2 Alkaloid 8HGO medium borderline
GhirD06G0009880.1 Alkaloid 8HGO low borderline
GhirD06G0009880.2 Alkaloid 8HGO low borderline
GhirD07G0018070.1 Alkaloid 8HGO medium pass
GhirD07G0018080.1 Alkaloid 8HGO medium borderline
GhirD07G0024310.1 Alkaloid 8HGO medium borderline
GhirD08G0013290.1 Alkaloid 8HGO medium borderline
GhirD08G0027180.1 Alkaloid 8HGO medium borderline
GhirD10G0026510.1 Alkaloid 8HGO medium borderline
GhirD11G0006590.1 Alkaloid 8HGO medium borderline
GhirD11G0006600.1 Alkaloid 8HGO medium borderline
GhirA03G0022180.1 Alkaloid ADC medium pass
GhirA04G0015700.1 Alkaloid ADC medium pass
GhirA06G0016660.1 Alkaloid ADC low borderline
GhirA13G0009710.1 Alkaloid ADC medium pass
GhirD02G0026140.1 Alkaloid ADC medium pass
GhirD04G0019930.1 Alkaloid ADC medium pass
GhirD04G0019940.1 Alkaloid ADC medium pass
GhirD06G0018430.1 Alkaloid ADC low borderline
GhirD06G0018430.2 Alkaloid ADC low borderline
GhirD06G0018430.3 Alkaloid ADC low borderline
GhirD06G0018430.4 Alkaloid ADC low borderline
GhirD06G0018430.5 Alkaloid ADC low borderline
GhirD13G0011160.1 Alkaloid ADC medium pass
GhirA02G0002050.1 Alkaloid BBE medium borderline
GhirA02G0002070.1 Alkaloid BBE medium borderline
GhirA02G0002080.1 Alkaloid BBE medium borderline
GhirA02G0002090.1 Alkaloid BBE medium borderline
GhirA02G0002100.1 Alkaloid BBE medium borderline
GhirA02G0009500.1 Alkaloid BBE medium borderline
GhirA04G0016780.1 Alkaloid BBE medium borderline
GhirA04G0016790.1 Alkaloid BBE medium borderline
GhirA04G0016800.1 Alkaloid BBE medium borderline
GhirA05G0011860.1 Alkaloid BBE medium borderline
GhirA06G0013150.1 Alkaloid BBE medium borderline
GhirA06G0020300.1 Alkaloid BBE medium borderline
GhirA06G0020310.1 Alkaloid BBE medium borderline
GhirA06G0020350.1 Alkaloid BBE medium borderline
GhirA07G0002790.1 Alkaloid BBE low borderline
GhirA07G0007160.1 Alkaloid BBE medium borderline
GhirA07G0007170.1 Alkaloid BBE medium borderline
GhirA08G0016050.1 Alkaloid BBE medium borderline
GhirA09G0014690.1 Alkaloid BBE low borderline
GhirA09G0014690.2 Alkaloid BBE low borderline
GhirA09G0014690.3 Alkaloid BBE low borderline
GhirA09G0019810.1 Alkaloid BBE medium borderline
GhirA09G0019830.1 Alkaloid BBE medium borderline
GhirA10G0000640.1 Alkaloid BBE medium borderline
GhirA10G0000650.1 Alkaloid BBE medium borderline