PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirA10G0000660.1 Alkaloid BBE medium borderline
GhirA10G0000670.1 Alkaloid BBE medium borderline
GhirA10G0000680.1 Alkaloid BBE medium borderline
GhirA10G0000690.1 Alkaloid BBE medium borderline
GhirA10G0000700.1 Alkaloid BBE medium borderline
GhirA10G0000710.1 Alkaloid BBE medium borderline
GhirA10G0000730.1 Alkaloid BBE medium borderline
GhirA10G0000740.1 Alkaloid BBE medium borderline
GhirA10G0000750.1 Alkaloid BBE medium borderline
GhirA10G0007880.1 Alkaloid BBE medium borderline
GhirA10G0014510.1 Alkaloid BBE medium borderline
GhirA10G0016440.1 Alkaloid BBE medium borderline
GhirA10G0017160.1 Alkaloid BBE medium borderline
GhirA11G0001080.1 Alkaloid BBE medium borderline
GhirA11G0001090.1 Alkaloid BBE medium borderline
GhirA12G0028460.1 Alkaloid BBE medium borderline
GhirA12G0028470.1 Alkaloid BBE medium borderline
GhirA12G0028480.1 Alkaloid BBE medium borderline
GhirA12G0028490.1 Alkaloid BBE medium borderline
GhirA12G0028500.1 Alkaloid BBE medium borderline
GhirA13G0002010.1 Alkaloid BBE medium borderline
GhirD02G0002270.1 Alkaloid BBE medium borderline
GhirD02G0002280.1 Alkaloid BBE medium borderline
GhirD02G0002290.1 Alkaloid BBE medium borderline
GhirD02G0002300.1 Alkaloid BBE medium borderline
GhirD02G0002310.1 Alkaloid BBE medium borderline
GhirD02G0002320.1 Alkaloid BBE medium borderline
GhirD02G0002330.1 Alkaloid BBE medium borderline
GhirD02G0012630.1 Alkaloid BBE medium borderline
GhirD02G0012640.1 Alkaloid BBE medium borderline
GhirD04G0021270.1 Alkaloid BBE medium borderline
GhirD04G0021280.1 Alkaloid BBE medium borderline
GhirD05G0012240.1 Alkaloid BBE medium borderline
GhirD06G0014470.1 Alkaloid BBE medium borderline
GhirD06G0022410.1 Alkaloid BBE medium borderline
GhirD06G0022420.1 Alkaloid BBE medium borderline
GhirD06G0022430.1 Alkaloid BBE medium borderline
GhirD07G0007340.1 Alkaloid BBE medium borderline
GhirD08G0017540.1 Alkaloid BBE medium borderline
GhirD09G0015080.1 Alkaloid BBE low borderline
GhirD09G0020220.1 Alkaloid BBE medium borderline
GhirD09G0020240.1 Alkaloid BBE medium borderline
GhirD10G0000700.1 Alkaloid BBE medium borderline
GhirD10G0000710.1 Alkaloid BBE medium borderline
GhirD10G0000720.1 Alkaloid BBE medium borderline
GhirD10G0000730.1 Alkaloid BBE medium borderline
GhirD10G0000740.1 Alkaloid BBE medium borderline
GhirD10G0000750.1 Alkaloid BBE medium borderline
GhirD10G0000760.1 Alkaloid BBE medium borderline
GhirD10G0000780.1 Alkaloid BBE medium borderline