PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirD12G0002830.1 Flavonoid F3'H/CYP75B low borderline
GhirD12G0002840.1 Flavonoid F3'H/CYP75B low borderline
GhirD12G0005890.1 Flavonoid F3'H/CYP75B low borderline
GhirD12G0006840.1 Flavonoid F3'H/CYP75B medium borderline
GhirD12G0010250.1 Flavonoid F3'H/CYP75B medium borderline
GhirD12G0011480.1 Flavonoid F3'H/CYP75B low borderline
GhirD12G0011480.2 Flavonoid F3'H/CYP75B low borderline
GhirD12G0013150.1 Flavonoid F3'H/CYP75B medium borderline
GhirD12G0013320.1 Flavonoid F3'H/CYP75B medium borderline
GhirD12G0018550.1 Flavonoid F3'H/CYP75B medium borderline
GhirD12G0021440.1 Flavonoid F3'H/CYP75B medium borderline
GhirD12G0029190.1 Flavonoid F3'H/CYP75B low borderline
GhirD12G0029950.1 Flavonoid F3'H/CYP75B medium borderline
GhirD12G0029960.1 Flavonoid F3'H/CYP75B medium borderline
GhirD12G0029970.1 Flavonoid F3'H/CYP75B medium borderline
GhirD13G0000120.1 Flavonoid F3'H/CYP75B medium borderline
GhirD13G0001460.1 Flavonoid F3'H/CYP75B medium borderline
GhirD13G0009100.1 Flavonoid F3'H/CYP75B low borderline
GhirD13G0009670.1 Flavonoid F3'H/CYP75B medium borderline
GhirD13G0016140.1 Flavonoid F3'H/CYP75B medium borderline
GhirD13G0018850.1 Flavonoid F3'H/CYP75B medium borderline
GhirD13G0024170.1 Flavonoid F3'H/CYP75B medium borderline
Ghirscaffold_5210003460.1 Flavonoid F3'H/CYP75B medium borderline
GhirA01G0000340.1 Flavonoid F3H medium borderline
GhirA01G0000650.1 Flavonoid F3H medium borderline
GhirA01G0000660.1 Flavonoid F3H medium borderline
GhirA01G0000660.2 Flavonoid F3H medium borderline
GhirA01G0000660.3 Flavonoid F3H medium borderline
GhirA01G0000660.4 Flavonoid F3H medium borderline
GhirA01G0003400.1 Flavonoid F3H medium borderline
GhirA01G0003810.1 Flavonoid F3H medium borderline
GhirA01G0003810.2 Flavonoid F3H medium borderline
GhirA01G0003810.3 Flavonoid F3H medium borderline
GhirA01G0003830.1 Flavonoid F3H medium borderline
GhirA01G0003840.1 Flavonoid F3H medium borderline
GhirA01G0003870.1 Flavonoid F3H medium borderline
GhirA01G0003880.1 Flavonoid F3H medium borderline
GhirA01G0003890.1 Flavonoid F3H medium borderline
GhirA01G0004510.1 Flavonoid F3H medium borderline
GhirA01G0004520.1 Flavonoid F3H medium borderline
GhirA01G0006100.1 Flavonoid F3H medium borderline
GhirA01G0007810.1 Flavonoid F3H medium borderline
GhirA01G0014550.1 Flavonoid F3H medium borderline
GhirA01G0023720.1 Flavonoid F3H medium borderline
GhirA01G0024900.1 Flavonoid F3H medium borderline
GhirA01G0024900.2 Flavonoid F3H medium borderline
GhirA02G0004330.1 Flavonoid F3H medium borderline
GhirA02G0004330.2 Flavonoid F3H medium borderline
GhirA02G0004340.1 Flavonoid F3H medium borderline
GhirA02G0004350.1 Flavonoid F3H medium borderline