PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
GhirA02G0004360.1 Flavonoid F3H medium borderline
GhirA02G0004370.2 Flavonoid F3H low borderline
GhirA02G0004380.1 Flavonoid F3H medium borderline
GhirA02G0004390.1 Flavonoid F3H medium borderline
GhirA02G0004390.2 Flavonoid F3H medium borderline
GhirA02G0008090.1 Flavonoid F3H medium borderline
GhirA02G0008100.1 Flavonoid F3H medium borderline
GhirA02G0012260.1 Flavonoid F3H medium borderline
GhirA02G0013830.1 Flavonoid F3H low borderline
GhirA02G0014170.1 Flavonoid F3H low borderline
GhirA02G0017560.1 Flavonoid F3H low borderline
GhirA03G0012750.1 Flavonoid F3H medium borderline
GhirA03G0013600.1 Flavonoid F3H medium borderline
GhirA04G0002950.1 Flavonoid F3H low borderline
GhirA04G0002960.1 Flavonoid F3H low borderline
GhirA04G0002970.1 Flavonoid F3H low borderline
GhirA04G0002980.1 Flavonoid F3H low borderline
GhirA04G0002990.1 Flavonoid F3H low borderline
GhirA04G0003000.1 Flavonoid F3H low borderline
GhirA04G0003010.1 Flavonoid F3H low borderline
GhirA04G0003030.1 Flavonoid F3H low borderline
GhirA04G0009400.1 Flavonoid F3H medium borderline
GhirA04G0010900.1 Flavonoid F3H medium borderline
GhirA05G0001440.1 Flavonoid F3H medium borderline
GhirA05G0009240.1 Flavonoid F3H low borderline
GhirA05G0014040.1 Flavonoid F3H low borderline
GhirA05G0014040.2 Flavonoid F3H low borderline
GhirA05G0017840.1 Flavonoid F3H medium borderline
GhirA05G0018470.1 Flavonoid F3H medium borderline
GhirA05G0023560.1 Flavonoid F3H medium borderline
GhirA05G0024620.1 Flavonoid F3H medium borderline
GhirA05G0025320.1 Flavonoid F3H medium pass
GhirA05G0035650.1 Flavonoid F3H medium borderline
GhirA05G0037760.1 Flavonoid F3H medium borderline
GhirA05G0037770.1 Flavonoid F3H medium borderline
GhirA05G0037800.1 Flavonoid F3H medium borderline
GhirA05G0042370.1 Flavonoid F3H medium borderline
GhirA05G0042370.2 Flavonoid F3H medium borderline
GhirA05G0042380.1 Flavonoid F3H medium borderline
GhirA06G0005790.1 Flavonoid F3H medium borderline
GhirA06G0005810.1 Flavonoid F3H medium borderline
GhirA06G0005810.2 Flavonoid F3H medium borderline
GhirA06G0005820.1 Flavonoid F3H medium borderline
GhirA06G0007420.1 Flavonoid F3H low borderline
GhirA06G0007420.2 Flavonoid F3H low borderline
GhirA06G0007420.3 Flavonoid F3H low borderline
GhirA06G0007420.4 Flavonoid F3H low borderline
GhirA06G0007420.5 Flavonoid F3H low borderline
GhirA06G0016990.1 Flavonoid F3H medium borderline
GhirA06G0017290.1 Flavonoid F3H low borderline