PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirA06G0017290.2 Flavonoid F3H low borderline
GhirA06G0020920.1 Flavonoid F3H medium borderline
GhirA06G0021990.1 Flavonoid F3H medium borderline
GhirA07G0001140.1 Flavonoid F3H medium borderline
GhirA07G0004630.1 Flavonoid F3H medium borderline
GhirA07G0004850.1 Flavonoid F3H medium borderline
GhirA07G0005270.1 Flavonoid F3H medium borderline
GhirA07G0007480.1 Flavonoid F3H medium borderline
GhirA07G0009770.1 Flavonoid F3H medium borderline
GhirA07G0009780.1 Flavonoid F3H medium borderline
GhirA07G0009790.1 Flavonoid F3H medium borderline
GhirA07G0016380.1 Flavonoid F3H medium borderline
GhirA07G0016390.1 Flavonoid F3H medium borderline
GhirA07G0020780.1 Flavonoid F3H low borderline
GhirA07G0021250.1 Flavonoid F3H medium borderline
GhirA07G0023940.1 Flavonoid F3H medium borderline
GhirA07G0023990.1 Flavonoid F3H medium borderline
GhirA07G0024000.1 Flavonoid F3H medium borderline
GhirA08G0000760.1 Flavonoid F3H medium borderline
GhirA08G0004880.1 Flavonoid F3H medium borderline
GhirA08G0006040.1 Flavonoid F3H medium borderline
GhirA08G0007050.1 Flavonoid F3H medium borderline
GhirA08G0010300.1 Flavonoid F3H low borderline
GhirA08G0012490.1 Flavonoid F3H medium borderline
GhirA08G0012790.1 Flavonoid F3H medium borderline
GhirA08G0017930.1 Flavonoid F3H medium borderline
GhirA08G0018770.1 Flavonoid F3H medium pass
GhirA08G0018790.1 Flavonoid F3H low borderline
GhirA08G0018790.2 Flavonoid F3H low borderline
GhirA08G0018790.3 Flavonoid F3H medium borderline
GhirA08G0018800.1 Flavonoid F3H low borderline
GhirA08G0018800.2 Flavonoid F3H low borderline
GhirA08G0018810.1 Flavonoid F3H medium pass
GhirA08G0018810.2 Flavonoid F3H medium pass
GhirA08G0018810.3 Flavonoid F3H medium pass
GhirA08G0018810.4 Flavonoid F3H medium pass
GhirA08G0018810.5 Flavonoid F3H medium pass
GhirA08G0018810.6 Flavonoid F3H medium pass
GhirA08G0019710.1 Flavonoid F3H medium borderline
GhirA08G0021160.1 Flavonoid F3H medium borderline
GhirA08G0021170.1 Flavonoid F3H medium pass
GhirA08G0021180.1 Flavonoid F3H medium borderline
GhirA08G0021180.2 Flavonoid F3H medium borderline
GhirA08G0021180.3 Flavonoid F3H medium pass
GhirA08G0021180.4 Flavonoid F3H medium borderline
GhirA08G0021190.1 Flavonoid F3H medium borderline
GhirA08G0021210.1 Flavonoid F3H medium borderline
GhirA08G0025230.1 Flavonoid F3H medium borderline
GhirA08G0025240.1 Flavonoid F3H medium borderline
GhirA08G0025250.1 Flavonoid F3H medium borderline