PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirA02G0002760.1 Flavonoid C4H medium borderline
GhirA02G0002770.1 Flavonoid C4H medium borderline
GhirA02G0002790.1 Flavonoid C4H medium borderline
GhirA02G0002800.1 Flavonoid C4H medium borderline
GhirA02G0002830.1 Flavonoid C4H medium borderline
GhirA02G0002840.1 Flavonoid C4H medium borderline
GhirA02G0002850.1 Flavonoid C4H low borderline
GhirA02G0002860.1 Flavonoid C4H medium borderline
GhirA02G0002880.1 Flavonoid C4H medium borderline
GhirA02G0002880.2 Flavonoid C4H medium borderline
GhirA04G0018340.1 Flavonoid C4H medium borderline
GhirA04G0018350.1 Flavonoid C4H medium borderline
GhirA06G0020000.1 Flavonoid C4H low borderline
GhirA10G0019670.1 Flavonoid C4H medium borderline
GhirA13G0004050.1 Flavonoid C4H medium borderline
GhirA13G0004070.1 Flavonoid C4H medium borderline
GhirA13G0006330.1 Flavonoid C4H medium borderline
GhirA13G0006330.2 Flavonoid C4H medium borderline
GhirA13G0006330.3 Flavonoid C4H medium borderline
GhirD02G0003330.1 Flavonoid C4H medium borderline
GhirD02G0003350.1 Flavonoid C4H medium borderline
GhirD02G0003360.1 Flavonoid C4H low borderline
GhirD02G0003360.2 Flavonoid C4H low borderline
GhirD02G0003360.3 Flavonoid C4H medium borderline
GhirD02G0003370.1 Flavonoid C4H medium borderline
GhirD02G0003400.1 Flavonoid C4H medium borderline
GhirD02G0003420.1 Flavonoid C4H medium borderline
GhirD02G0003430.1 Flavonoid C4H medium borderline
GhirD02G0003440.2 Flavonoid C4H medium borderline
GhirD02G0003460.1 Flavonoid C4H medium borderline
GhirD02G0003460.2 Flavonoid C4H medium borderline
GhirD02G0003470.1 Flavonoid C4H medium borderline
GhirD02G0003480.1 Flavonoid C4H medium borderline
GhirD02G0003490.1 Flavonoid C4H medium borderline
GhirD02G0003500.1 Flavonoid C4H medium borderline
GhirD02G0003520.1 Flavonoid C4H medium borderline
GhirD02G0003560.1 Flavonoid C4H medium borderline
GhirD04G0023110.1 Flavonoid C4H medium borderline
GhirD06G0022170.1 Flavonoid C4H low borderline
GhirD08G0021320.1 Flavonoid C4H low borderline
GhirD10G0021420.1 Flavonoid C4H medium borderline
GhirD10G0023810.1 Flavonoid C4H medium borderline
GhirD13G0004260.1 Flavonoid C4H medium borderline
GhirD13G0004270.1 Flavonoid C4H medium borderline
GhirD13G0004300.1 Flavonoid C4H medium borderline
GhirD13G0007370.1 Flavonoid C4H medium borderline
GhirD13G0009900.1 Flavonoid C4H medium borderline
GhirD13G0009930.1 Flavonoid C4H medium borderline
GhirD13G0028310.1 Flavonoid C4H medium borderline
GhirA05G0043510.1 Flavonoid CHI medium pass