PlantSME Plant secondary metabolism enzyme database

Gossypium hirsutum (gossypium_hirsutum)

Imported from atlas release summary for Gossypium hirsutum.

5656
Candidate Protein Records
4579
Pathway-Level Records
11461
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1367 21 BAHD (612) View species results
Alkaloid pathway 1056 25 NMT (183) View species results
Phenylpropanoid pathway 975 12 POD (389) View species results
Flavonoid pathway 507 11 UFGT (306) View species results
Rosmarinic acid pathway 363 7 C4H (130) View species results
Steroid pathway 311 12 CAS (159) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4387 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 960 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GhirA07G0001990.1 Flavonoid CHI low borderline
GhirA07G0001990.2 Flavonoid CHI low borderline
GhirA07G0001990.3 Flavonoid CHI low borderline
GhirA07G0001990.4 Flavonoid CHI low borderline
GhirA07G0025330.1 Flavonoid CHI medium pass
GhirA07G0025330.2 Flavonoid CHI medium pass
GhirA13G0002210.1 Flavonoid CHI medium pass
GhirD04G0001680.1 Flavonoid CHI medium pass
GhirD07G0002130.1 Flavonoid CHI low borderline
GhirD07G0002130.3 Flavonoid CHI low borderline
GhirD07G0026720.1 Flavonoid CHI medium pass
GhirD13G0002470.1 Flavonoid CHI medium pass
GhirA02G0003020.1 Flavonoid CHS medium pass
GhirA05G0025410.1 Flavonoid CHS medium pass
GhirA05G0025510.1 Flavonoid CHS medium pass
GhirA05G0025520.1 Flavonoid CHS medium pass
GhirA05G0034150.1 Flavonoid CHS medium pass
GhirA08G0015710.1 Flavonoid CHS medium pass
GhirA09G0000040.1 Flavonoid CHS medium pass
GhirA09G0000100.1 Flavonoid CHS medium pass
GhirA10G0013570.1 Flavonoid CHS medium pass
GhirA10G0013580.1 Flavonoid CHS medium pass
GhirA12G0004350.1 Flavonoid CHS medium pass
GhirD02G0003720.1 Flavonoid CHS medium pass
GhirD05G0026190.1 Flavonoid CHS medium pass
GhirD05G0026320.1 Flavonoid CHS medium pass
GhirD05G0026330.1 Flavonoid CHS medium pass
GhirD05G0035120.1 Flavonoid CHS medium pass
GhirD08G0017190.1 Flavonoid CHS medium pass
GhirD09G0000030.1 Flavonoid CHS medium pass
GhirD09G0000040.1 Flavonoid CHS medium pass
GhirD10G0016650.1 Flavonoid CHS medium pass
GhirD10G0016680.1 Flavonoid CHS medium pass
GhirD12G0003580.1 Flavonoid CHS medium pass
GhirA02G0014490.1 Flavonoid DFR medium pass
GhirA03G0020680.1 Flavonoid DFR low borderline
GhirA05G0012630.1 Flavonoid DFR medium borderline
GhirA05G0029370.1 Flavonoid DFR medium borderline
GhirA07G0016470.1 Flavonoid DFR medium borderline
GhirA08G0010570.1 Flavonoid DFR medium borderline
GhirA08G0010570.2 Flavonoid DFR medium borderline
GhirA08G0010570.3 Flavonoid DFR medium borderline
GhirA08G0017560.1 Flavonoid DFR medium borderline
GhirA08G0022630.1 Flavonoid DFR medium borderline
GhirA08G0022630.2 Flavonoid DFR medium borderline
GhirA08G0024010.1 Flavonoid DFR low borderline
GhirA09G0012720.1 Flavonoid DFR medium borderline
GhirA11G0008290.1 Flavonoid DFR medium borderline
GhirA11G0008290.2 Flavonoid DFR medium borderline
GhirA12G0001330.1 Flavonoid DFR medium borderline