PlantSME Plant secondary metabolism enzyme database

Liriodendron chinense (liriodendron_chinense)

Imported from atlas release summary for Liriodendron chinense.

2075
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Current group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.23% Alkaloid pathway 23.42% Phenylpropanoid pathway 20.14% Flavonoid pathway 13.93% Rosmarinic acid pathway 9.93% Steroid pathway 5.35%
Family Distribution
C3'H/CYP98A 6.95% C4H 6.85% BAHD 5.0% CYP76 4.5% IFS 4.12% UGT 4.06% T3O 3.89% 7DLGT 3.85%
Other Families 60.78%
More Families (97)
UFGT 193 3.71% POD 155 2.98% 4CL 150 2.89% DWF4/CYP90B1 148 2.85% F3'H/CYP75B 127 2.44% BR6OX2/CYP85A2 118 2.27% CAD 115 2.21% F3H 103 1.98% TPS 85 1.64% GES 79 1.52% CYP71 72 1.39% COMT 71 1.37% CODM/T6ODM 68 1.31% CAS 68 1.31% NMT 67 1.29% TRI/TRII 63 1.21% 16OMT 61 1.17% T16H 60 1.15% STR 59 1.14% SGD 57 1.1% SMT1/SMT2/SMT3 56 1.08% HCT 54 1.04% CSE 54 1.04% ANR 52 1.0% CYP90D1 50 0.96% PYKS 45 0.87% GS 45 0.87% IFR 44 0.85% G8O/G8H 40 0.77% H6H 38 0.73% LAC 38 0.73% COR 32 0.62% IO 29 0.56% RAS 29 0.56% CCR 28 0.54% SLS 27 0.52% PAL 27 0.52% TAT 27 0.52% F3'5'H/CYP75A 26 0.5% 7DLH 25 0.48% CHS 25 0.48% CYP51G1 25 0.48% FNS 24 0.46% PMT 23 0.44% NCS 22 0.42% DFR 20 0.38% BR6OX1/CYP85A1 19 0.37% AACT 19 0.37% MPO 18 0.35% CPD/CYP90A1 18 0.35% CYP719 17 0.33% BBE 17 0.33% 8HGO 15 0.29% F5H/CYP84A 15 0.29% TYDC_DDC 13 0.25% ANS/LDOX 13 0.25% LAMT 11 0.21% CNMT 10 0.19% CHI 10 0.19% CCoAOMT 10 0.19% GGPPS 10 0.19% DXS 9 0.17% CPR 8 0.15% ROT3/CYP90C1 8 0.15% SQS/FDFT1 7 0.13% HPPR 6 0.12% FPPS 6 0.12% MVK 6 0.12% ODC 5 0.1% XMT_MXMT_DXMT 5 0.1% SMO1/SMO2 5 0.1% ISY 4 0.08% DWF7 4 0.08% DET2 4 0.08% MVD 4 0.08% ADC 3 0.06% TDC 3 0.06% FLS 3 0.06% SQE 3 0.06% HMGS 3 0.06% CYP80B1 2 0.04% CPI1 2 0.04% IDI 2 0.04% PMK 2 0.04% DXR 2 0.04% HMGR 2 0.04% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02% HYD1 1 0.02% DWF1 1 0.02% FK 1 0.02% DWF5 1 0.02% HDR/IspH 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02% MCT/IspD 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 20 UGT (192) View species results
Alkaloid pathway 486 23 7DLGT (113) View species results
Phenylpropanoid pathway 418 11 POD (141) View species results
Flavonoid pathway 289 11 UFGT (181) View species results
Rosmarinic acid pathway 206 7 C4H (118) View species results
Steroid pathway 111 13 CAS (57) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2194 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 343 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BBE
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Gene Pathway Family Confidence Status Best Target
LchiScaffold12420036070 Alkaloid BBE medium borderline BBE__00001__sp_A7WPL6_BBLB_TOBAC
LchiScaffold1380053770 Alkaloid BBE low borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
LchiScaffold17220090740 Alkaloid BBE medium borderline BBE__00001__sp_A7WPL6_BBLB_TOBAC
LchiScaffold17220090750 Alkaloid BBE medium borderline BBE__00001__sp_A7WPL6_BBLB_TOBAC
LchiScaffold2270130800 Alkaloid BBE low borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
LchiScaffold2340136620 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
LchiScaffold2340136630 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
LchiScaffold23560137140 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
LchiScaffold34190197910 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
LchiScaffold34190197920 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
LchiScaffold34190197930 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
LchiScaffold34190197960 Alkaloid BBE medium borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
LchiScaffold4240228890 Alkaloid BBE medium borderline BBE__00004__sp_O64743_BBE15_ARATH
LchiScaffold4240228900 Alkaloid BBE low borderline BBE__00006__sp_Q9FI21_BBE28_ARATH
LchiScaffold7230297600 Alkaloid BBE low borderline BBE__00003__sp_F1T161_BBLC1_TOBAC
LchiScaffold9330342110 Alkaloid BBE medium borderline BBE__00001__sp_A7WPL6_BBLB_TOBAC
LchiScaffold9330342140 Alkaloid BBE medium borderline BBE__00001__sp_A7WPL6_BBLB_TOBAC