PlantSME Plant secondary metabolism enzyme database

Liriodendron chinense (liriodendron_chinense)

Imported from atlas release summary for Liriodendron chinense.

2075
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 20 UGT (192) View species results
Alkaloid pathway 486 23 7DLGT (113) View species results
Phenylpropanoid pathway 418 11 POD (141) View species results
Flavonoid pathway 289 11 UFGT (181) View species results
Rosmarinic acid pathway 206 7 C4H (118) View species results
Steroid pathway 111 13 CAS (57) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2194 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 343 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
Reset
Gene Pathway Family Confidence Status Best Target
LchiScaffold11380020480 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
LchiScaffold1580076120 Flavonoid PAL low borderline PAL__00003__sp_P45724_PAL2_ARATH
LchiScaffold17070086580 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
LchiScaffold20300117400 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
LchiScaffold2700154810 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
LchiScaffold280161000 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
LchiScaffold4160227250 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
LchiScaffold5260259720 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
LchiScaffold5800270800 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
LchiScaffold11380020480 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
LchiScaffold1580076120 Phenylpropanoid PAL low borderline PAL__00003__sp_P45724_PAL2_ARATH
LchiScaffold17070086580 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
LchiScaffold20300117400 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
LchiScaffold2700154810 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
LchiScaffold280161000 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
LchiScaffold4160227250 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
LchiScaffold5260259720 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
LchiScaffold5800270800 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
LchiScaffold11380020480 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
LchiScaffold1580076120 Rosmarinic Acid PAL low borderline PAL__00003__sp_P45724_PAL2_ARATH
LchiScaffold17070086580 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
LchiScaffold20300117400 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
LchiScaffold2700154810 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
LchiScaffold280161000 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
LchiScaffold4160227250 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
LchiScaffold5260259720 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
LchiScaffold5800270800 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH