PlantSME Plant secondary metabolism enzyme database

Liriodendron chinense (liriodendron_chinense)

Imported from atlas release summary for Liriodendron chinense.

2075
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 20 UGT (192) View species results
Alkaloid pathway 486 23 7DLGT (113) View species results
Phenylpropanoid pathway 418 11 POD (141) View species results
Flavonoid pathway 289 11 UFGT (181) View species results
Rosmarinic acid pathway 206 7 C4H (118) View species results
Steroid pathway 111 13 CAS (57) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2194 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 343 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
LchiScaffold1000000080 Alkaloid PYKS high pass
LchiScaffold1000000100 Alkaloid PYKS high pass
LchiScaffold1000000110 Alkaloid PYKS high pass
LchiScaffold1000000120 Alkaloid PYKS high pass
LchiScaffold1000000140 Alkaloid PYKS high pass
LchiScaffold1000000180 Alkaloid PYKS high pass
LchiScaffold1000000190 Alkaloid PYKS high pass
LchiScaffold1000000200 Alkaloid PYKS high pass
LchiScaffold1000000210 Alkaloid PYKS high pass
LchiScaffold1000000220 Alkaloid PYKS high pass
LchiScaffold10750011550 Alkaloid PYKS low borderline
LchiScaffold13300046600 Alkaloid PYKS low borderline
LchiScaffold15560074320 Alkaloid PYKS high pass
LchiScaffold15560074330 Alkaloid PYKS high pass
LchiScaffold15560074340 Alkaloid PYKS high pass
LchiScaffold19880114370 Alkaloid PYKS low borderline
LchiScaffold20160116560 Alkaloid PYKS high pass
LchiScaffold20160116570 Alkaloid PYKS high pass
LchiScaffold20160116580 Alkaloid PYKS high pass
LchiScaffold20160116600 Alkaloid PYKS high pass
LchiScaffold24320141200 Alkaloid PYKS low borderline
LchiScaffold2690154090 Alkaloid PYKS low borderline
LchiScaffold2900170650 Alkaloid PYKS low borderline
LchiScaffold34720202590 Alkaloid PYKS high pass
LchiScaffold4160226180 Alkaloid PYKS low borderline
LchiScaffold4320235510 Alkaloid PYKS medium pass
LchiScaffold4470237150 Alkaloid PYKS low borderline
LchiScaffold50246060 Alkaloid PYKS low borderline
LchiScaffold5250258780 Alkaloid PYKS low borderline
LchiScaffold670283200 Alkaloid PYKS low borderline
LchiScaffold670283230 Alkaloid PYKS low borderline
LchiScaffold6930288860 Alkaloid PYKS high pass
LchiScaffold6930288870 Alkaloid PYKS high pass
LchiScaffold7480301270 Alkaloid PYKS low borderline
LchiScaffold7750308190 Alkaloid PYKS low borderline
LchiScaffold7760308750 Alkaloid PYKS high pass
LchiScaffold8200320960 Alkaloid PYKS high pass
LchiScaffold8200320970 Alkaloid PYKS high pass
LchiScaffold8360322840 Alkaloid PYKS low borderline
LchiScaffold8840330770 Alkaloid PYKS low borderline
LchiScaffold9330342080 Alkaloid PYKS low borderline
LchiScaffold9430343430 Alkaloid PYKS high pass
LchiScaffold9450344740 Alkaloid PYKS low borderline
LchiScaffold9450344750 Alkaloid PYKS low borderline
LchiScaffold9450344760 Alkaloid PYKS low borderline