Liriodendron chinense (liriodendron_chinense)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 27.23% Alkaloid pathway 23.42% Phenylpropanoid pathway 20.14% Flavonoid pathway 13.93% Rosmarinic acid pathway 9.93% Steroid pathway 5.35%

Family Distribution

2075 Candidate Genes

C3'H/CYP98A 6.95% C4H 6.85% BAHD 5.0% CYP76 4.5% IFS 4.12% UGT 4.06% T3O 3.89% 7DLGT 3.85%

Other Families 60.78%

More Families (97)

UFGT 193 3.71% POD 155 2.98% 4CL 150 2.89% DWF4/CYP90B1 148 2.85% F3'H/CYP75B 127 2.44% BR6OX2/CYP85A2 118 2.27% CAD 115 2.21% F3H 103 1.98% TPS 85 1.64% GES 79 1.52% CYP71 72 1.39% COMT 71 1.37% CODM/T6ODM 68 1.31% CAS 68 1.31% NMT 67 1.29% TRI/TRII 63 1.21% 16OMT 61 1.17% T16H 60 1.15% STR 59 1.14% SGD 57 1.1% SMT1/SMT2/SMT3 56 1.08% HCT 54 1.04% CSE 54 1.04% ANR 52 1.0% CYP90D1 50 0.96% PYKS 45 0.87% GS 45 0.87% IFR 44 0.85% G8O/G8H 40 0.77% H6H 38 0.73% LAC 38 0.73% COR 32 0.62% IO 29 0.56% RAS 29 0.56% CCR 28 0.54% SLS 27 0.52% PAL 27 0.52% TAT 27 0.52% F3'5'H/CYP75A 26 0.5% 7DLH 25 0.48% CHS 25 0.48% CYP51G1 25 0.48% FNS 24 0.46% PMT 23 0.44% NCS 22 0.42% DFR 20 0.38% BR6OX1/CYP85A1 19 0.37% AACT 19 0.37% MPO 18 0.35% CPD/CYP90A1 18 0.35% CYP719 17 0.33% BBE 17 0.33% 8HGO 15 0.29% F5H/CYP84A 15 0.29% TYDC_DDC 13 0.25% ANS/LDOX 13 0.25% LAMT 11 0.21% CNMT 10 0.19% CHI 10 0.19% CCoAOMT 10 0.19% GGPPS 10 0.19% DXS 9 0.17% CPR 8 0.15% ROT3/CYP90C1 8 0.15% SQS/FDFT1 7 0.13% HPPR 6 0.12% FPPS 6 0.12% MVK 6 0.12% ODC 5 0.1% XMT_MXMT_DXMT 5 0.1% SMO1/SMO2 5 0.1% ISY 4 0.08% DWF7 4 0.08% DET2 4 0.08% MVD 4 0.08% ADC 3 0.06% TDC 3 0.06% FLS 3 0.06% SQE 3 0.06% HMGS 3 0.06% CYP80B1 2 0.04% CPI1 2 0.04% IDI 2 0.04% PMK 2 0.04% DXR 2 0.04% HMGR 2 0.04% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02% HYD1 1 0.02% DWF1 1 0.02% FK 1 0.02% DWF5 1 0.02% HDR/IspH 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02% MDS/IspF 1 0.02% MCT/IspD 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	565	20	UGT (192)	View species results
Alkaloid pathway	486	23	7DLGT (113)	View species results
Phenylpropanoid pathway	418	11	POD (141)	View species results
Flavonoid pathway	289	11	UFGT (181)	View species results
Rosmarinic acid pathway	206	7	C4H (118)	View species results
Steroid pathway	111	13	CAS (57)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	2194	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	343	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
LchiScaffold1000000610	Alkaloid	NMT	medium	pass	NMT__00042__sp_Q8GZB6_SUVH4_ARATH
LchiScaffold10620010520	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
LchiScaffold10880013420	Alkaloid	NMT	medium	pass	NMT__00021__sp_O64827_SUVR5_ARATH
LchiScaffold11910029500	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
LchiScaffold12190033060	Alkaloid	NMT	medium	pass	NMT__00021__sp_O64827_SUVR5_ARATH
LchiScaffold1240035320	Alkaloid	NMT	medium	pass	NMT__00020__sp_O23372_ATXR3_ARATH
LchiScaffold12920040180	Alkaloid	NMT	medium	pass	NMT__00018__sp_I1M2U5_NAMT1_SOYBN
LchiScaffold12960040910	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
LchiScaffold13330047600	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
LchiScaffold1350048580	Alkaloid	NMT	medium	borderline	NMT__00006__sp_A0A6C0WW38_CKCS_CAMSB
LchiScaffold14000057300	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
LchiScaffold1400056440	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
LchiScaffold14540063380	Alkaloid	NMT	low	borderline	NMT__00015__sp_C8YTM5_PEAM2_WHEAT
LchiScaffold15130071900	Alkaloid	NMT	medium	pass	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
LchiScaffold15130071930	Alkaloid	NMT	low	borderline	NMT__00054__sp_Q9FF80_SUVH1_ARATH
LchiScaffold15190072450	Alkaloid	NMT	medium	pass	NMT__00024__sp_P0CB22_ATX2_ARATH
LchiScaffold15560074310	Alkaloid	NMT	medium	pass	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
LchiScaffold17130087980	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
LchiScaffold17140088030	Alkaloid	NMT	medium	pass	NMT__00018__sp_I1M2U5_NAMT1_SOYBN
LchiScaffold1980114010	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
LchiScaffold20480118850	Alkaloid	NMT	medium	borderline	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
LchiScaffold20840119910	Alkaloid	NMT	low	borderline	NMT__00030__sp_Q43088_RBCMT_PEA
LchiScaffold2110122220	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
LchiScaffold23140133880	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
LchiScaffold2340135730	Alkaloid	NMT	medium	pass	NMT__00066__sp_Q9SU94_ANM11_ARATH
LchiScaffold2580149630	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
LchiScaffold2580150430	Alkaloid	NMT	medium	pass	NMT__00061__sp_Q9SAH5_PLMT_ARATH
LchiScaffold2890169120	Alkaloid	NMT	low	borderline	NMT__00040__sp_Q84WW6_ASHH1_ARATH
LchiScaffold2900170230	Alkaloid	NMT	medium	borderline	NMT__00052__sp_Q9AVJ9_MXMT1_COFAR
LchiScaffold2900170900	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
LchiScaffold29670176030	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
LchiScaffold3260189750	Alkaloid	NMT	medium	borderline	NMT__00050__sp_Q944H0_PEAM2_ARATH
LchiScaffold33410194500	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
LchiScaffold3440199110	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
LchiScaffold3450200230	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
LchiScaffold34720202580	Alkaloid	NMT	medium	pass	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
LchiScaffold36750213560	Alkaloid	NMT	medium	pass	NMT__00035__sp_Q6K431_TRX1_ORYSJ
LchiScaffold390220470	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
LchiScaffold3990221800	Alkaloid	NMT	medium	pass	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
LchiScaffold4320233780	Alkaloid	NMT	low	borderline	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
LchiScaffold4320235870	Alkaloid	NMT	low	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
LchiScaffold4470237000	Alkaloid	NMT	low	borderline	NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
LchiScaffold4800244110	Alkaloid	NMT	medium	pass	NMT__00034__sp_Q5VN06_CLF_ORYSJ
LchiScaffold5020249890	Alkaloid	NMT	low	borderline	NMT__00023__sp_O82210_ANM12_ARATH
LchiScaffold5020250310	Alkaloid	NMT	medium	pass	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
LchiScaffold5030250890	Alkaloid	NMT	medium	borderline	NMT__00053__sp_Q9C6B9_PEAM3_ARATH
LchiScaffold5060251870	Alkaloid	NMT	medium	pass	NMT__00068__sp_Q9XI84_RBCMT_ARATH
LchiScaffold5140255810	Alkaloid	NMT	low	borderline	NMT__00048__sp_Q8W595_SUVR4_ARATH
LchiScaffold5230258370	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
LchiScaffold5270259880	Alkaloid	NMT	low	borderline	NMT__00057__sp_Q9FR44_PEAM1_ARATH