Liriodendron chinense (liriodendron_chinense)
Imported from atlas release summary for Liriodendron chinense.
2075
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2075
Candidate Genes
C3'H/CYP98A
6.95%
C4H
6.85%
BAHD
5.0%
CYP76
4.5%
IFS
4.12%
UGT
4.06%
T3O
3.89%
7DLGT
3.85%
Other Families
60.78%
More Families (97)
UFGT
193
3.71%
POD
155
2.98%
4CL
150
2.89%
DWF4/CYP90B1
148
2.85%
F3'H/CYP75B
127
2.44%
BR6OX2/CYP85A2
118
2.27%
CAD
115
2.21%
F3H
103
1.98%
TPS
85
1.64%
GES
79
1.52%
CYP71
72
1.39%
COMT
71
1.37%
CODM/T6ODM
68
1.31%
CAS
68
1.31%
NMT
67
1.29%
TRI/TRII
63
1.21%
16OMT
61
1.17%
T16H
60
1.15%
STR
59
1.14%
SGD
57
1.1%
SMT1/SMT2/SMT3
56
1.08%
HCT
54
1.04%
CSE
54
1.04%
ANR
52
1.0%
CYP90D1
50
0.96%
PYKS
45
0.87%
GS
45
0.87%
IFR
44
0.85%
G8O/G8H
40
0.77%
H6H
38
0.73%
LAC
38
0.73%
COR
32
0.62%
IO
29
0.56%
RAS
29
0.56%
CCR
28
0.54%
SLS
27
0.52%
PAL
27
0.52%
TAT
27
0.52%
F3'5'H/CYP75A
26
0.5%
7DLH
25
0.48%
CHS
25
0.48%
CYP51G1
25
0.48%
FNS
24
0.46%
PMT
23
0.44%
NCS
22
0.42%
DFR
20
0.38%
BR6OX1/CYP85A1
19
0.37%
AACT
19
0.37%
MPO
18
0.35%
CPD/CYP90A1
18
0.35%
CYP719
17
0.33%
BBE
17
0.33%
8HGO
15
0.29%
F5H/CYP84A
15
0.29%
TYDC_DDC
13
0.25%
ANS/LDOX
13
0.25%
LAMT
11
0.21%
CNMT
10
0.19%
CHI
10
0.19%
CCoAOMT
10
0.19%
GGPPS
10
0.19%
DXS
9
0.17%
CPR
8
0.15%
ROT3/CYP90C1
8
0.15%
SQS/FDFT1
7
0.13%
HPPR
6
0.12%
FPPS
6
0.12%
MVK
6
0.12%
ODC
5
0.1%
XMT_MXMT_DXMT
5
0.1%
SMO1/SMO2
5
0.1%
ISY
4
0.08%
DWF7
4
0.08%
DET2
4
0.08%
MVD
4
0.08%
ADC
3
0.06%
TDC
3
0.06%
FLS
3
0.06%
SQE
3
0.06%
HMGS
3
0.06%
CYP80B1
2
0.04%
CPI1
2
0.04%
IDI
2
0.04%
PMK
2
0.04%
DXR
2
0.04%
HMGR
2
0.04%
CYP80F1
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
HYD1
1
0.02%
DWF1
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
HDR/IspH
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
MDS/IspF
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 565 | 20 | UGT (192) | View species results |
| Alkaloid pathway | 486 | 23 | 7DLGT (113) | View species results |
| Phenylpropanoid pathway | 418 | 11 | POD (141) | View species results |
| Flavonoid pathway | 289 | 11 | UFGT (181) | View species results |
| Rosmarinic acid pathway | 206 | 7 | C4H (118) | View species results |
| Steroid pathway | 111 | 13 | CAS (57) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2194 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 343 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| LchiScaffold10400007580 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| LchiScaffold11000015010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold11000015100 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| LchiScaffold11090016690 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold11230017600 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold11910027610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold130041990 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| LchiScaffold130042020 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| LchiScaffold130042050 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| LchiScaffold13320047080 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold13950055230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold14000056910 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold14140058660 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold15030070360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold16980085420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold1970112770 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold19740113200 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold20480118000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold20480118020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold20480118030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold20480118040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold20480118050 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold21030121300 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| LchiScaffold21070121540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold22570129970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold27950159230 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| LchiScaffold28280165500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2900170240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2900170280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2900170400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2900170410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2900170440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2900170470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2900170490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2900170500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2900170510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold2910171900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold31750184650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold32230188630 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| LchiScaffold3260189790 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold34190197900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold35780208910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold35780209350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold3850218600 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| LchiScaffold3960220770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold3970221480 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold4530238120 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold6040276920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold7230297610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| LchiScaffold7800310460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |