PlantSME Plant secondary metabolism enzyme database

Liriodendron chinense (liriodendron_chinense)

Imported from atlas release summary for Liriodendron chinense.

2075
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 20 UGT (192) View species results
Alkaloid pathway 486 23 7DLGT (113) View species results
Phenylpropanoid pathway 418 11 POD (141) View species results
Flavonoid pathway 289 11 UFGT (181) View species results
Rosmarinic acid pathway 206 7 C4H (118) View species results
Steroid pathway 111 13 CAS (57) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2194 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 343 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status Best Target
LchiScaffold10390007170 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
LchiScaffold10610009900 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold10990014880 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold11300018410 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
LchiScaffold11560024060 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
LchiScaffold12860038990 Phenylpropanoid 4CL medium pass 4CL__00005__sp_P0C5B6_4CLL4_ARATH
LchiScaffold130041890 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold13340047750 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold1470065070 Phenylpropanoid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
LchiScaffold15570074690 Phenylpropanoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
LchiScaffold1620081070 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
LchiScaffold16910084600 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
LchiScaffold17070087220 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold17070087240 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold18720103870 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
LchiScaffold18830104670 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
LchiScaffold20380117520 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
LchiScaffold2110122140 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
LchiScaffold25790148730 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold2580148740 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
LchiScaffold26330152900 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
LchiScaffold2740157030 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold28830168530 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
LchiScaffold29680176080 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
LchiScaffold320185100 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
LchiScaffold34760202620 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
LchiScaffold3850218230 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold3850218260 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold3960221320 Phenylpropanoid 4CL low borderline 4CL__00003__sp_M4ISH0_CCL1_HUMLU
LchiScaffold3960221330 Phenylpropanoid 4CL medium pass 4CL__00006__sp_P17814_4CL1_ORYSJ
LchiScaffold4320232910 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
LchiScaffold4320233080 Phenylpropanoid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
LchiScaffold5020249060 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
LchiScaffold5020249070 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
LchiScaffold5020249090 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
LchiScaffold5850271950 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
LchiScaffold5850271960 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
LchiScaffold5850272230 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
LchiScaffold5850272240 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
LchiScaffold5850272260 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
LchiScaffold6820284890 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
LchiScaffold7230298230 Phenylpropanoid 4CL low borderline 4CL__00018__sp_Q9S777_4CL3_ARATH
LchiScaffold7640304270 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
LchiScaffold7830311430 Phenylpropanoid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
LchiScaffold8360322810 Phenylpropanoid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
LchiScaffold9150335990 Phenylpropanoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
LchiScaffold9150336930 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
LchiScaffold9150338560 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
LchiScaffold9640348000 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
LchiScaffold980349070 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH