PlantSME Plant secondary metabolism enzyme database

Medicago truncatula (medicago_truncatula)

Imported from atlas release summary for Medicago truncatula.

2701
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 776 20 UGT (307) View species results
Alkaloid pathway 660 20 7DLGT (137) View species results
Phenylpropanoid pathway 501 12 POD (218) View species results
Flavonoid pathway 400 11 UFGT (277) View species results
Rosmarinic acid pathway 186 7 C4H (81) View species results
Steroid pathway 178 12 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2512 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 465 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Mtru02G0003350.1 Rosmarinic Acid C4H low borderline
Mtru02G0003360.1 Rosmarinic Acid C4H low borderline
Mtru02G0003370.1 Rosmarinic Acid C4H low borderline
Mtru02G0003380.1 Rosmarinic Acid C4H low borderline
Mtru02G0003410.1 Rosmarinic Acid C4H low borderline
Mtru02G0003530.1 Rosmarinic Acid C4H low borderline
Mtru02G0009430.1 Rosmarinic Acid C4H low borderline
Mtru02G0012210.1 Rosmarinic Acid C4H low borderline
Mtru02G0017010.1 Rosmarinic Acid C4H low borderline
Mtru02G0017020.1 Rosmarinic Acid C4H low borderline
Mtru02G0017020.2 Rosmarinic Acid C4H low borderline
Mtru02G0020620.1 Rosmarinic Acid C4H low borderline
Mtru02G0020640.1 Rosmarinic Acid C4H medium pass
Mtru02G0022230.1 Rosmarinic Acid C4H medium pass
Mtru02G0029230.1 Rosmarinic Acid C4H medium pass
Mtru02G0029230.2 Rosmarinic Acid C4H medium pass
Mtru02G0030680.1 Rosmarinic Acid C4H low borderline
Mtru02G0033180.1 Rosmarinic Acid C4H low borderline
Mtru02G0034720.1 Rosmarinic Acid C4H medium pass
Mtru02G0038010.1 Rosmarinic Acid C4H low borderline
Mtru02G0038800.1 Rosmarinic Acid C4H low borderline
Mtru02G0038810.1 Rosmarinic Acid C4H low borderline
Mtru02G0038830.1 Rosmarinic Acid C4H low borderline
Mtru02G0045340.1 Rosmarinic Acid C4H low borderline
Mtru02G0053060.1 Rosmarinic Acid C4H low borderline
Mtru02G0058310.1 Rosmarinic Acid C4H low borderline
Mtru03G0001270.1 Rosmarinic Acid C4H low borderline
Mtru03G0004400.1 Rosmarinic Acid C4H low borderline
Mtru03G0004400.2 Rosmarinic Acid C4H low borderline
Mtru03G0005530.1 Rosmarinic Acid C4H low borderline
Mtru03G0007390.1 Rosmarinic Acid C4H medium pass
Mtru03G0009120.1 Rosmarinic Acid C4H medium pass
Mtru03G0009140.1 Rosmarinic Acid C4H medium pass
Mtru03G0009150.1 Rosmarinic Acid C4H low borderline
Mtru03G0009160.1 Rosmarinic Acid C4H low borderline
Mtru03G0014150.1 Rosmarinic Acid C4H medium pass
Mtru03G0014190.1 Rosmarinic Acid C4H low borderline
Mtru03G0023630.1 Rosmarinic Acid C4H low borderline
Mtru03G0023690.1 Rosmarinic Acid C4H medium pass
Mtru03G0023710.1 Rosmarinic Acid C4H medium pass
Mtru03G0023720.1 Rosmarinic Acid C4H medium pass
Mtru03G0023730.1 Rosmarinic Acid C4H medium pass
Mtru03G0023740.1 Rosmarinic Acid C4H low borderline
Mtru03G0023750.1 Rosmarinic Acid C4H low borderline
Mtru03G0023780.1 Rosmarinic Acid C4H low borderline
Mtru03G0023790.1 Rosmarinic Acid C4H low borderline
Mtru03G0023810.1 Rosmarinic Acid C4H low borderline
Mtru03G0023830.1 Rosmarinic Acid C4H low borderline
Mtru03G0023850.1 Rosmarinic Acid C4H low borderline
Mtru03G0023890.1 Rosmarinic Acid C4H low borderline