PlantSME Plant secondary metabolism enzyme database

Medicago truncatula (medicago_truncatula)

Imported from atlas release summary for Medicago truncatula.

2701
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.73% Alkaloid pathway 24.44% Phenylpropanoid pathway 18.55% Flavonoid pathway 14.81% Rosmarinic acid pathway 6.89% Steroid pathway 6.59%
Family Distribution
C3'H/CYP98A 5.86% C4H 5.73% BAHD 5.26% UGT 4.76% 7DLGT 4.39% UFGT 4.31% IFS 3.74% T3O 3.55%
Other Families 62.41%
More Families (98)
4CL 240 3.53% POD 229 3.37% CYP76 224 3.3% F3H 219 3.22% NMT 195 2.87% DWF4/CYP90B1 166 2.44% F3'H/CYP75B 142 2.09% CODM/T6ODM 141 2.08% BR6OX2/CYP85A2 116 1.71% STR 106 1.56% CAD 106 1.56% SMT1/SMT2/SMT3 102 1.5% H6H 101 1.49% CYP71 101 1.49% CAS 93 1.37% SGD 88 1.3% TRI/TRII 74 1.09% COMT 74 1.09% TPS 68 1.0% HCT 60 0.88% CYP90D1 59 0.87% 7DLH 58 0.85% GES 56 0.82% ANR 55 0.81% IFR 55 0.81% PYKS 52 0.77% CSE 51 0.75% GS 50 0.74% G8O/G8H 48 0.71% RAS 48 0.71% LAC 47 0.69% SLS 42 0.62% PMT 41 0.6% T16H 41 0.6% 16OMT 40 0.59% F3'5'H/CYP75A 40 0.59% FNS 39 0.57% CCR 38 0.56% BBE 35 0.52% BR6OX1/CYP85A1 34 0.5% IO 31 0.46% NCS 30 0.44% CYP51G1 30 0.44% COR 29 0.43% F5H/CYP84A 29 0.43% CHS 26 0.38% DFR 25 0.37% ANS/LDOX 24 0.35% 8HGO 23 0.34% CPD/CYP90A1 23 0.34% MPO 21 0.31% PAL 21 0.31% ROT3/CYP90C1 20 0.29% LAMT 19 0.28% CPR 19 0.28% CCoAOMT 17 0.25% TAT 17 0.25% CNMT 16 0.24% CYP80B1 15 0.22% CHI 15 0.22% SQS/FDFT1 15 0.22% AACT 13 0.19% HMGR 13 0.19% ISY 11 0.16% SQE 11 0.16% DWF5 11 0.16% CYP719 10 0.15% HPPR 10 0.15% FPPS 10 0.15% DET2 9 0.13% TDC 8 0.12% SMO1/SMO2 8 0.12% DXS 8 0.12% TYDC_DDC 7 0.1% MVK 7 0.1% MVD 6 0.09% MCT/IspD 6 0.09% ADC 5 0.07% DWF1 5 0.07% GGPPS 5 0.07% FLS 4 0.06% HMGS 4 0.06% XMT_MXMT_DXMT 3 0.04% CPI1 3 0.04% DWF7 3 0.04% HDR/IspH 3 0.04% DXR 3 0.04% ODC 2 0.03% HDS/IspG 2 0.03% MDS/IspF 2 0.03% 6OMT_4OMT_SOMT 1 0.01% CYP80F1 1 0.01% FK 1 0.01% HYD1 1 0.01% CMK/IspE 1 0.01% PMK 1 0.01% GPPS 1 0.01% IDI 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 776 20 UGT (307) View species results
Alkaloid pathway 660 20 7DLGT (137) View species results
Phenylpropanoid pathway 501 12 POD (218) View species results
Flavonoid pathway 400 11 UFGT (277) View species results
Rosmarinic acid pathway 186 7 C4H (81) View species results
Steroid pathway 178 12 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2512 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 465 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DET2
Reset
Gene Pathway Family Confidence Status
Mtru04G0028520.1 Steroid DET2 medium pass
Mtru05G0007920.1 Steroid DET2 low borderline
Mtru05G0049340.1 Steroid DET2 low borderline
Mtru06G0016350.1 Steroid DET2 low borderline
Mtru06G0016410.1 Steroid DET2 low borderline
Mtru07G0027060.1 Steroid DET2 medium pass
Mtru08G0057370.1 Steroid DET2 low borderline
Mtru08G0057370.2 Steroid DET2 medium borderline
Mtru08G0057370.3 Steroid DET2 medium borderline