PlantSME Plant secondary metabolism enzyme database

Medicago truncatula (medicago_truncatula)

Imported from atlas release summary for Medicago truncatula.

2701
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 776 20 UGT (307) View species results
Alkaloid pathway 660 20 7DLGT (137) View species results
Phenylpropanoid pathway 501 12 POD (218) View species results
Flavonoid pathway 400 11 UFGT (277) View species results
Rosmarinic acid pathway 186 7 C4H (81) View species results
Steroid pathway 178 12 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2512 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 465 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ROT3/CYP90C1
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Gene Pathway Family Confidence Status Best Target
Mtru02G0017020.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru02G0017020.2 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru03G0001270.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru03G0029680.2 Steroid ROT3/CYP90C1 low borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru03G0057540.2 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru03G0063530.1 Steroid ROT3/CYP90C1 low borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru05G0004790.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru05G0004790.2 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru05G0011900.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru06G0007280.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru06G0015500.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru07G0006070.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru07G0006070.2 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru08G0039430.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru08G0039710.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru08G0039710.2 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru08G0039710.3 Steroid ROT3/CYP90C1 low borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru08G0039710.4 Steroid ROT3/CYP90C1 low borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtru08G0046570.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH
Mtruscaffold00450006410.1 Steroid ROT3/CYP90C1 medium borderline ROT3_CYP90C1__00001__sp_Q9M066_C90C1_ARATH