Medicago truncatula (medicago_truncatula)
Imported from atlas release summary for Medicago truncatula.
2701
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2701
Candidate Genes
C3'H/CYP98A
5.86%
C4H
5.73%
BAHD
5.26%
UGT
4.76%
7DLGT
4.39%
UFGT
4.31%
IFS
3.74%
T3O
3.55%
Other Families
62.41%
More Families (98)
4CL
240
3.53%
POD
229
3.37%
CYP76
224
3.3%
F3H
219
3.22%
NMT
195
2.87%
DWF4/CYP90B1
166
2.44%
F3'H/CYP75B
142
2.09%
CODM/T6ODM
141
2.08%
BR6OX2/CYP85A2
116
1.71%
STR
106
1.56%
CAD
106
1.56%
SMT1/SMT2/SMT3
102
1.5%
H6H
101
1.49%
CYP71
101
1.49%
CAS
93
1.37%
SGD
88
1.3%
TRI/TRII
74
1.09%
COMT
74
1.09%
TPS
68
1.0%
HCT
60
0.88%
CYP90D1
59
0.87%
7DLH
58
0.85%
GES
56
0.82%
ANR
55
0.81%
IFR
55
0.81%
PYKS
52
0.77%
CSE
51
0.75%
GS
50
0.74%
G8O/G8H
48
0.71%
RAS
48
0.71%
LAC
47
0.69%
SLS
42
0.62%
PMT
41
0.6%
T16H
41
0.6%
16OMT
40
0.59%
F3'5'H/CYP75A
40
0.59%
FNS
39
0.57%
CCR
38
0.56%
BBE
35
0.52%
BR6OX1/CYP85A1
34
0.5%
IO
31
0.46%
NCS
30
0.44%
CYP51G1
30
0.44%
COR
29
0.43%
F5H/CYP84A
29
0.43%
CHS
26
0.38%
DFR
25
0.37%
ANS/LDOX
24
0.35%
8HGO
23
0.34%
CPD/CYP90A1
23
0.34%
MPO
21
0.31%
PAL
21
0.31%
ROT3/CYP90C1
20
0.29%
LAMT
19
0.28%
CPR
19
0.28%
CCoAOMT
17
0.25%
TAT
17
0.25%
CNMT
16
0.24%
CYP80B1
15
0.22%
CHI
15
0.22%
SQS/FDFT1
15
0.22%
AACT
13
0.19%
HMGR
13
0.19%
ISY
11
0.16%
SQE
11
0.16%
DWF5
11
0.16%
CYP719
10
0.15%
HPPR
10
0.15%
FPPS
10
0.15%
DET2
9
0.13%
TDC
8
0.12%
SMO1/SMO2
8
0.12%
DXS
8
0.12%
TYDC_DDC
7
0.1%
MVK
7
0.1%
MVD
6
0.09%
MCT/IspD
6
0.09%
ADC
5
0.07%
DWF1
5
0.07%
GGPPS
5
0.07%
FLS
4
0.06%
HMGS
4
0.06%
XMT_MXMT_DXMT
3
0.04%
CPI1
3
0.04%
DWF7
3
0.04%
HDR/IspH
3
0.04%
DXR
3
0.04%
ODC
2
0.03%
HDS/IspG
2
0.03%
MDS/IspF
2
0.03%
6OMT_4OMT_SOMT
1
0.01%
CYP80F1
1
0.01%
FK
1
0.01%
HYD1
1
0.01%
CMK/IspE
1
0.01%
PMK
1
0.01%
GPPS
1
0.01%
IDI
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 776 | 20 | UGT (307) | View species results |
| Alkaloid pathway | 660 | 20 | 7DLGT (137) | View species results |
| Phenylpropanoid pathway | 501 | 12 | POD (218) | View species results |
| Flavonoid pathway | 400 | 11 | UFGT (277) | View species results |
| Rosmarinic acid pathway | 186 | 7 | C4H (81) | View species results |
| Steroid pathway | 178 | 12 | CAS (73) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2512 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 465 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Mtru01G0002770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0002780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0025310.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0029380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0029380.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0029410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0033810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0051590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0052210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0052700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0052700.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0053870.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0055740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0061560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0061560.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru01G0066230.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru02G0025440.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mtru02G0025470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mtru02G0031140.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Mtru02G0031150.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mtru02G0031160.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mtru02G0040660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru02G0042100.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru02G0046490.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mtru02G0053850.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mtru02G0055320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru02G0056450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru02G0056470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru02G0056480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru03G0016090.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru03G0026960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru03G0052000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru03G0059820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0003940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0003950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0003960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0020680.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mtru04G0023250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0025440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0036460.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0036460.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0036460.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0036460.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0036460.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0036480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0047350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0047360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0047380.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0047390.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mtru04G0047420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |