PlantSME Plant secondary metabolism enzyme database

Medicago truncatula (medicago_truncatula)

Imported from atlas release summary for Medicago truncatula.

2701
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 776 20 UGT (307) View species results
Alkaloid pathway 660 20 7DLGT (137) View species results
Phenylpropanoid pathway 501 12 POD (218) View species results
Flavonoid pathway 400 11 UFGT (277) View species results
Rosmarinic acid pathway 186 7 C4H (81) View species results
Steroid pathway 178 12 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2512 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 465 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Mtru01G0004830.1 Alkaloid PMT medium pass
Mtru01G0012820.1 Alkaloid PMT medium borderline
Mtru01G0019500.1 Alkaloid PMT medium pass
Mtru01G0019510.1 Alkaloid PMT low borderline
Mtru01G0019520.1 Alkaloid PMT medium pass
Mtru01G0019570.1 Alkaloid PMT medium pass
Mtru01G0019580.1 Alkaloid PMT low borderline
Mtru02G0034700.1 Alkaloid PMT low borderline
Mtru02G0058290.1 Alkaloid PMT low borderline
Mtru03G0013970.1 Alkaloid PMT low borderline
Mtru03G0035200.1 Alkaloid PMT low borderline
Mtru03G0039550.1 Alkaloid PMT medium borderline
Mtru03G0048360.1 Alkaloid PMT medium borderline
Mtru03G0048360.2 Alkaloid PMT medium borderline
Mtru03G0053730.1 Alkaloid PMT medium pass
Mtru03G0053730.2 Alkaloid PMT medium pass
Mtru03G0057870.1 Alkaloid PMT medium pass
Mtru03G0063590.1 Alkaloid PMT low borderline
Mtru04G0001440.1 Alkaloid PMT low borderline
Mtru04G0001440.2 Alkaloid PMT low borderline
Mtru04G0023760.1 Alkaloid PMT low borderline
Mtru04G0067970.1 Alkaloid PMT low borderline
Mtru05G0001020.1 Alkaloid PMT medium pass
Mtru05G0001020.2 Alkaloid PMT medium pass
Mtru05G0020760.1 Alkaloid PMT medium borderline
Mtru05G0020760.2 Alkaloid PMT medium borderline
Mtru05G0042080.1 Alkaloid PMT medium pass
Mtru07G0011350.1 Alkaloid PMT low borderline
Mtru07G0056480.1 Alkaloid PMT medium pass
Mtru07G0059260.1 Alkaloid PMT medium pass
Mtru07G0059300.1 Alkaloid PMT medium pass
Mtru07G0059320.1 Alkaloid PMT medium pass
Mtru08G0019540.1 Alkaloid PMT medium pass
Mtru08G0031820.1 Alkaloid PMT medium borderline
Mtru08G0038820.1 Alkaloid PMT low borderline
Mtru08G0038880.1 Alkaloid PMT low borderline
Mtru08G0043460.1 Alkaloid PMT low borderline
Mtru08G0050870.1 Alkaloid PMT medium pass
Mtruscaffold00420006160.1 Alkaloid PMT low borderline
Mtruscaffold00420006160.2 Alkaloid PMT low borderline
Mtruscaffold00420006170.1 Alkaloid PMT medium pass