Medicago truncatula (medicago_truncatula)
Imported from atlas release summary for Medicago truncatula.
3238
Candidate Protein Records
2701
Pathway-Level Records
6792
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6792
Family-Level Calls
C3'H/CYP98A
5.86%
C4H
5.73%
BAHD
5.26%
UGT
4.76%
7DLGT
4.39%
UFGT
4.31%
IFS
3.74%
T3O
3.55%
Other Families
62.41%
More Families (98)
4CL
240
3.53%
POD
229
3.37%
CYP76
224
3.3%
F3H
219
3.22%
NMT
195
2.87%
DWF4/CYP90B1
166
2.44%
F3'H/CYP75B
142
2.09%
CODM/T6ODM
141
2.08%
BR6OX2/CYP85A2
116
1.71%
STR
106
1.56%
CAD
106
1.56%
SMT1/SMT2/SMT3
102
1.5%
H6H
101
1.49%
CYP71
101
1.49%
CAS
93
1.37%
SGD
88
1.3%
TRI/TRII
74
1.09%
COMT
74
1.09%
TPS
68
1.0%
HCT
60
0.88%
CYP90D1
59
0.87%
7DLH
58
0.85%
GES
56
0.82%
ANR
55
0.81%
IFR
55
0.81%
PYKS
52
0.77%
CSE
51
0.75%
GS
50
0.74%
G8O/G8H
48
0.71%
RAS
48
0.71%
LAC
47
0.69%
SLS
42
0.62%
PMT
41
0.6%
T16H
41
0.6%
16OMT
40
0.59%
F3'5'H/CYP75A
40
0.59%
FNS
39
0.57%
CCR
38
0.56%
BBE
35
0.52%
BR6OX1/CYP85A1
34
0.5%
IO
31
0.46%
NCS
30
0.44%
CYP51G1
30
0.44%
COR
29
0.43%
F5H/CYP84A
29
0.43%
CHS
26
0.38%
DFR
25
0.37%
ANS/LDOX
24
0.35%
8HGO
23
0.34%
CPD/CYP90A1
23
0.34%
MPO
21
0.31%
PAL
21
0.31%
ROT3/CYP90C1
20
0.29%
LAMT
19
0.28%
CPR
19
0.28%
CCoAOMT
17
0.25%
TAT
17
0.25%
CNMT
16
0.24%
CYP80B1
15
0.22%
CHI
15
0.22%
SQS/FDFT1
15
0.22%
AACT
13
0.19%
HMGR
13
0.19%
ISY
11
0.16%
SQE
11
0.16%
DWF5
11
0.16%
CYP719
10
0.15%
HPPR
10
0.15%
FPPS
10
0.15%
DET2
9
0.13%
TDC
8
0.12%
SMO1/SMO2
8
0.12%
DXS
8
0.12%
TYDC_DDC
7
0.1%
MVK
7
0.1%
MVD
6
0.09%
MCT/IspD
6
0.09%
ADC
5
0.07%
DWF1
5
0.07%
GGPPS
5
0.07%
FLS
4
0.06%
HMGS
4
0.06%
XMT_MXMT_DXMT
3
0.04%
CPI1
3
0.04%
DWF7
3
0.04%
HDR/IspH
3
0.04%
DXR
3
0.04%
ODC
2
0.03%
HDS/IspG
2
0.03%
MDS/IspF
2
0.03%
6OMT_4OMT_SOMT
1
0.01%
CYP80F1
1
0.01%
FK
1
0.01%
HYD1
1
0.01%
CMK/IspE
1
0.01%
PMK
1
0.01%
GPPS
1
0.01%
IDI
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 776 | 20 | UGT (307) | View species results |
| Alkaloid pathway | 660 | 20 | 7DLGT (137) | View species results |
| Phenylpropanoid pathway | 501 | 12 | POD (218) | View species results |
| Flavonoid pathway | 400 | 11 | UFGT (277) | View species results |
| Rosmarinic acid pathway | 186 | 7 | C4H (81) | View species results |
| Steroid pathway | 178 | 12 | CAS (73) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2512 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 465 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Mtru04G0025030.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru04G0035460.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru04G0035460.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru04G0041560.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru04G0045170.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru04G0064980.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru04G0064990.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru05G0030710.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru05G0039540.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru05G0056750.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru06G0027690.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru07G0004160.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru07G0004980.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru07G0007890.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru07G0013650.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru07G0019000.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru07G0019000.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru07G0035620.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru07G0035620.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru07G0035620.3 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru07G0035620.4 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru07G0035620.5 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru07G0046430.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru08G0004340.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru08G0004340.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru08G0008640.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru08G0050590.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtru08G0057640.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru08G0057640.2 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru08G0057640.3 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru08G0057640.4 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtruscaffold00030001160.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtruscaffold00030001160.2 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Mtruscaffold00750008370.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Mtru01G0006160.1 | Steroid | SQE | medium | pass |
| Mtru01G0006160.2 | Steroid | SQE | medium | pass |
| Mtru02G0011740.1 | Steroid | SQE | low | borderline |
| Mtru03G0057010.1 | Steroid | SQE | medium | pass |
| Mtru03G0057010.2 | Steroid | SQE | medium | pass |
| Mtru03G0060710.1 | Steroid | SQE | low | borderline |
| Mtru04G0046500.1 | Steroid | SQE | medium | pass |
| Mtru05G0018410.1 | Steroid | SQE | low | borderline |
| Mtru06G0015520.1 | Steroid | SQE | medium | pass |
| Mtru06G0015610.1 | Steroid | SQE | medium | pass |
| Mtru07G0025880.1 | Steroid | SQE | low | borderline |
| Mtru03G0018350.1 | Steroid | SQS/FDFT1 | medium | pass |
| Mtru03G0043270.1 | Steroid | SQS/FDFT1 | low | borderline |
| Mtru04G0032970.1 | Steroid | SQS/FDFT1 | high | pass |
| Mtru04G0065440.1 | Steroid | SQS/FDFT1 | low | borderline |
| Mtru05G0005780.1 | Steroid | SQS/FDFT1 | low | borderline |