PlantSME Plant secondary metabolism enzyme database

Medicago truncatula (medicago_truncatula)

Imported from atlas release summary for Medicago truncatula.

2701
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 776 20 UGT (307) View species results
Alkaloid pathway 660 20 7DLGT (137) View species results
Phenylpropanoid pathway 501 12 POD (218) View species results
Flavonoid pathway 400 11 UFGT (277) View species results
Rosmarinic acid pathway 186 7 C4H (81) View species results
Steroid pathway 178 12 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2512 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 465 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
Mtru04G0037160.1 Phenylpropanoid 4CL medium pass
Mtru04G0064250.1 Phenylpropanoid 4CL medium pass
Mtru04G0068540.1 Phenylpropanoid 4CL medium pass
Mtru05G0002300.1 Phenylpropanoid 4CL medium pass
Mtru05G0003220.1 Phenylpropanoid 4CL medium pass
Mtru05G0003220.2 Phenylpropanoid 4CL medium pass
Mtru05G0003240.1 Phenylpropanoid 4CL medium pass
Mtru05G0003630.1 Phenylpropanoid 4CL low borderline
Mtru05G0003630.2 Phenylpropanoid 4CL low borderline
Mtru05G0003630.3 Phenylpropanoid 4CL low borderline
Mtru05G0003630.4 Phenylpropanoid 4CL low borderline
Mtru05G0003640.1 Phenylpropanoid 4CL low borderline
Mtru05G0003640.2 Phenylpropanoid 4CL low borderline
Mtru05G0013660.1 Phenylpropanoid 4CL medium pass
Mtru05G0016460.1 Phenylpropanoid 4CL medium pass
Mtru05G0016470.1 Phenylpropanoid 4CL medium pass
Mtru05G0041710.1 Phenylpropanoid 4CL medium pass
Mtru05G0041730.1 Phenylpropanoid 4CL medium pass
Mtru05G0041740.1 Phenylpropanoid 4CL medium pass
Mtru07G0038970.1 Phenylpropanoid 4CL low borderline
Mtru07G0055960.1 Phenylpropanoid 4CL low borderline
Mtru08G0019420.1 Phenylpropanoid 4CL medium pass
Mtru08G0037790.1 Phenylpropanoid 4CL medium pass
Mtru08G0037790.2 Phenylpropanoid 4CL medium pass
Mtru08G0037830.1 Phenylpropanoid 4CL medium pass
Mtru08G0043000.1 Phenylpropanoid 4CL low borderline
Mtru08G0052880.1 Phenylpropanoid 4CL low borderline
Mtruscaffold01610012010.1 Phenylpropanoid 4CL medium pass
Mtruscaffold08030021060.1 Phenylpropanoid 4CL low borderline
Mtruscaffold15690024100.1 Phenylpropanoid 4CL medium pass
Mtru01G0005220.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0005220.2 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0007470.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0008900.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0010110.1 Phenylpropanoid C3'H/CYP98A medium borderline
Mtru01G0010130.1 Phenylpropanoid C3'H/CYP98A medium borderline
Mtru01G0010140.1 Phenylpropanoid C3'H/CYP98A medium borderline
Mtru01G0014850.1 Phenylpropanoid C3'H/CYP98A high pass
Mtru01G0015730.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0016690.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0016890.1 Phenylpropanoid C3'H/CYP98A medium borderline
Mtru01G0016910.1 Phenylpropanoid C3'H/CYP98A medium borderline
Mtru01G0017260.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0017320.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0017380.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0017390.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0017410.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0017420.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0017430.1 Phenylpropanoid C3'H/CYP98A low borderline
Mtru01G0017480.1 Phenylpropanoid C3'H/CYP98A low borderline