PlantSME Plant secondary metabolism enzyme database

Medicago truncatula (medicago_truncatula)

Imported from atlas release summary for Medicago truncatula.

2701
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 776 20 UGT (307) View species results
Alkaloid pathway 660 20 7DLGT (137) View species results
Phenylpropanoid pathway 501 12 POD (218) View species results
Flavonoid pathway 400 11 UFGT (277) View species results
Rosmarinic acid pathway 186 7 C4H (81) View species results
Steroid pathway 178 12 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2512 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 465 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Mtru04G0037160.1 Rosmarinic Acid 4CL medium pass
Mtru04G0064250.1 Rosmarinic Acid 4CL medium pass
Mtru04G0068540.1 Rosmarinic Acid 4CL medium pass
Mtru05G0002300.1 Rosmarinic Acid 4CL medium pass
Mtru05G0003220.1 Rosmarinic Acid 4CL medium pass
Mtru05G0003220.2 Rosmarinic Acid 4CL medium pass
Mtru05G0003240.1 Rosmarinic Acid 4CL medium pass
Mtru05G0003630.1 Rosmarinic Acid 4CL low borderline
Mtru05G0003630.2 Rosmarinic Acid 4CL low borderline
Mtru05G0003630.3 Rosmarinic Acid 4CL low borderline
Mtru05G0003630.4 Rosmarinic Acid 4CL low borderline
Mtru05G0003640.1 Rosmarinic Acid 4CL low borderline
Mtru05G0003640.2 Rosmarinic Acid 4CL low borderline
Mtru05G0013660.1 Rosmarinic Acid 4CL medium pass
Mtru05G0016460.1 Rosmarinic Acid 4CL medium pass
Mtru05G0016470.1 Rosmarinic Acid 4CL medium pass
Mtru05G0041710.1 Rosmarinic Acid 4CL medium pass
Mtru05G0041730.1 Rosmarinic Acid 4CL medium pass
Mtru05G0041740.1 Rosmarinic Acid 4CL medium pass
Mtru07G0038970.1 Rosmarinic Acid 4CL low borderline
Mtru07G0055960.1 Rosmarinic Acid 4CL low borderline
Mtru08G0019420.1 Rosmarinic Acid 4CL medium pass
Mtru08G0037790.1 Rosmarinic Acid 4CL medium pass
Mtru08G0037790.2 Rosmarinic Acid 4CL medium pass
Mtru08G0037830.1 Rosmarinic Acid 4CL medium pass
Mtru08G0043000.1 Rosmarinic Acid 4CL low borderline
Mtru08G0052880.1 Rosmarinic Acid 4CL low borderline
Mtruscaffold01610012010.1 Rosmarinic Acid 4CL medium pass
Mtruscaffold08030021060.1 Rosmarinic Acid 4CL low borderline
Mtruscaffold15690024100.1 Rosmarinic Acid 4CL medium pass
Mtru01G0005220.1 Rosmarinic Acid C4H low borderline
Mtru01G0005220.2 Rosmarinic Acid C4H low borderline
Mtru01G0007470.1 Rosmarinic Acid C4H low borderline
Mtru01G0008900.1 Rosmarinic Acid C4H low borderline
Mtru01G0010110.1 Rosmarinic Acid C4H low borderline
Mtru01G0010130.1 Rosmarinic Acid C4H low borderline
Mtru01G0010140.1 Rosmarinic Acid C4H low borderline
Mtru01G0014850.1 Rosmarinic Acid C4H low borderline
Mtru01G0014860.1 Rosmarinic Acid C4H medium pass
Mtru01G0015710.1 Rosmarinic Acid C4H low borderline
Mtru01G0015730.1 Rosmarinic Acid C4H low borderline
Mtru01G0016890.1 Rosmarinic Acid C4H medium pass
Mtru01G0016910.1 Rosmarinic Acid C4H medium pass
Mtru01G0017390.1 Rosmarinic Acid C4H low borderline
Mtru01G0017590.1 Rosmarinic Acid C4H low borderline
Mtru01G0017620.1 Rosmarinic Acid C4H low borderline
Mtru01G0018230.1 Rosmarinic Acid C4H low borderline
Mtru01G0018380.1 Rosmarinic Acid C4H low borderline
Mtru01G0018920.1 Rosmarinic Acid C4H low borderline
Mtru01G0020990.1 Rosmarinic Acid C4H low borderline