Simmondsia chinensis (simmondsia_chinensis)
Imported from atlas release summary for Simmondsia chinensis.
2205
Candidate Protein Records
1765
Pathway-Level Records
4100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4100
Family-Level Calls
BAHD
6.2%
C4H
5.49%
C3'H/CYP98A
4.73%
NMT
4.59%
4CL
4.39%
POD
4.0%
CYP76
3.2%
IFS
3.07%
Other Families
64.34%
More Families (95)
F3H
124
3.02%
UGT
118
2.88%
T3O
116
2.83%
7DLGT
105
2.56%
UFGT
98
2.39%
CAD
85
2.07%
COMT
80
1.95%
DWF4/CYP90B1
79
1.93%
H6H
76
1.85%
STR
75
1.83%
SGD
74
1.8%
SMT1/SMT2/SMT3
73
1.78%
BR6OX2/CYP85A2
65
1.59%
CAS
62
1.51%
TRI/TRII
61
1.49%
F3'H/CYP75B
60
1.46%
TPS
60
1.46%
CYP71
58
1.41%
CODM/T6ODM
56
1.37%
IFR
56
1.37%
GES
55
1.34%
16OMT
41
1.0%
GS
38
0.93%
ANR
37
0.9%
PYKS
36
0.88%
T16H
35
0.85%
LAC
33
0.8%
CSE
31
0.76%
IO
29
0.71%
RAS
29
0.71%
CYP90D1
29
0.71%
FNS
28
0.68%
CCR
27
0.66%
PMT
26
0.63%
HCT
25
0.61%
SLS
24
0.59%
8HGO
24
0.59%
F3'5'H/CYP75A
24
0.59%
CPR
23
0.56%
BR6OX1/CYP85A1
23
0.56%
7DLH
22
0.54%
TAT
22
0.54%
AACT
20
0.49%
COR
19
0.46%
BBE
18
0.44%
CCoAOMT
17
0.41%
ROT3/CYP90C1
17
0.41%
G8O/G8H
16
0.39%
LAMT
16
0.39%
F5H/CYP84A
15
0.37%
CYP51G1
15
0.37%
DFR
14
0.34%
CHS
13
0.32%
GGPPS
12
0.29%
FPPS
12
0.29%
SQE
11
0.27%
DXS
11
0.27%
NCS
10
0.24%
SQS/FDFT1
10
0.24%
CPD/CYP90A1
10
0.24%
CNMT
9
0.22%
ISY
9
0.22%
SMO1/SMO2
9
0.22%
TYDC_DDC
8
0.2%
ANS/LDOX
7
0.17%
TDC
6
0.15%
PAL
6
0.15%
HPPR
6
0.15%
MVK
6
0.15%
IDI
6
0.15%
XMT_MXMT_DXMT
5
0.12%
CHI
5
0.12%
DET2
5
0.12%
MPO
4
0.1%
MVD
4
0.1%
HDS/IspG
4
0.1%
MCT/IspD
4
0.1%
CYP719
3
0.07%
CYP80F1
3
0.07%
CYP80B1
3
0.07%
DWF1
3
0.07%
HMGR
3
0.07%
HDR/IspH
3
0.07%
6OMT_4OMT_SOMT
2
0.05%
ADC
2
0.05%
FK
2
0.05%
HYD1
2
0.05%
HMGS
2
0.05%
CMK/IspE
2
0.05%
DXR
2
0.05%
ODC
1
0.02%
DWF7
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 476 | 19 | BAHD (195) | View species results |
| Alkaloid pathway | 472 | 21 | NMT (101) | View species results |
| Phenylpropanoid pathway | 383 | 13 | POD (160) | View species results |
| Flavonoid pathway | 172 | 10 | UFGT (94) | View species results |
| Rosmarinic acid pathway | 131 | 7 | C4H (45) | View species results |
| Steroid pathway | 131 | 11 | SMT1/SMT2/SMT3 (49) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1322 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 308 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| SIchi13G0001650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi13G0001650.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi13G0006720.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi16G0003850.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi16G0003850.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi16G0011290.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi18G0000950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi18G0002640.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi18G0002640.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi18G0003840.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi18G0003870.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi19G0001660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi19G0001660.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi20G0001710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi20G0002360.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi20G0005260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi22G0002030.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi22G0002030.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi23G0006980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi23G0006980.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi25G0000740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi25G0000740.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi25G0000740.3 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SIchi25G0005410.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SIchi25G0005410.2 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |