PlantSME Plant secondary metabolism enzyme database

Alnus rubra (alnus_rubra)

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Imported from atlas release summary for Alnus rubra.

1961
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 583 21 UGT (227) View species results
Phenylpropanoid pathway 399 13 POD (167) View species results
Alkaloid pathway 395 21 7DLGT (114) View species results
Flavonoid pathway 271 11 UFGT (192) View species results
Rosmarinic acid pathway 173 7 C4H (68) View species results
Steroid pathway 140 14 CAS (84) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1623 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 301 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Gene Pathway Family Confidence Status
alnus_rubra_ALNRU00121404-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00121418-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00122902-RA Steroid DWF4/CYP90B1 medium borderline
alnus_rubra_ALNRU00124100-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00125277-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00125385-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00127896-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00128741-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00128747-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00129996-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00131031-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00132175-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00132181-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00132185-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00132188-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00132796-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00135805-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00135812-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00136612-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00137130-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00138160-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00138589-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00140193-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00140725-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00140729-RA Steroid DWF4/CYP90B1 low borderline
alnus_rubra_ALNRU00055180-RA Steroid DWF5 medium pass
alnus_rubra_ALNRU00055188-RA Steroid DWF5 medium borderline
alnus_rubra_ALNRU00063633-RA Steroid DWF7 low borderline
alnus_rubra_ALNRU00063634-RA Steroid DWF7 medium pass
alnus_rubra_ALNRU00119200-RA Steroid DWF7 low borderline
alnus_rubra_ALNRU00073112-RA Steroid FK medium pass
alnus_rubra_ALNRU00001976-RA Steroid HYD1 medium pass
alnus_rubra_ALNRU00028013-RA Steroid ROT3/CYP90C1 medium borderline
alnus_rubra_ALNRU00039296-RA Steroid ROT3/CYP90C1 medium borderline
alnus_rubra_ALNRU00013208-RA Steroid SMO1/SMO2 medium pass
alnus_rubra_ALNRU00042204-RA Steroid SMO1/SMO2 medium pass
alnus_rubra_ALNRU00000647-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00003585-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00003592-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00005675-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005679-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005687-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005709-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005718-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00005719-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005728-RA Steroid SMT1/SMT2/SMT3 low borderline
alnus_rubra_ALNRU00005734-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005735-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005737-RA Steroid SMT1/SMT2/SMT3 medium pass
alnus_rubra_ALNRU00005806-RA Steroid SMT1/SMT2/SMT3 low borderline