PlantSME Plant secondary metabolism enzyme database

Camelina sativa (camelina_sativa)

Imported from atlas release summary for Camelina sativa.

4681
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.63% Alkaloid pathway 23.26% Phenylpropanoid pathway 19.55% Flavonoid pathway 12.11% Rosmarinic acid pathway 7.82% Steroid pathway 7.63%
Family Distribution
BAHD 6.33% C4H 6.22% C3'H/CYP98A 5.92% 4CL 4.08% CYP76 4.08% POD 3.85% IFS 3.82% UGT 3.43%
Other Families 62.26%
More Families (96)
UFGT 386 3.34% 7DLGT 378 3.27% T3O 342 2.96% NMT 341 2.95% F3H 314 2.72% DWF4/CYP90B1 273 2.36% BR6OX2/CYP85A2 260 2.25% F3'H/CYP75B 217 1.88% STR 213 1.84% SMT1/SMT2/SMT3 211 1.83% TRI/TRII 184 1.59% CYP71 178 1.54% CODM/T6ODM 167 1.45% SGD 166 1.44% H6H 165 1.43% CAS 141 1.22% T16H 136 1.18% CAD 136 1.18% IFR 127 1.1% BBE 126 1.09% CSE 120 1.04% PYKS 100 0.87% ANR 90 0.78% LAC 90 0.78% RAS 84 0.73% GES 79 0.68% IO 79 0.68% SLS 78 0.68% F5H/CYP84A 78 0.68% CYP90D1 78 0.68% TPS 78 0.68% FNS 73 0.63% G8O/G8H 70 0.61% COMT 70 0.61% TAT 70 0.61% CCR 69 0.6% HCT 64 0.55% GS 62 0.54% GGPPS 62 0.54% LAMT 58 0.5% F3'5'H/CYP75A 57 0.49% 16OMT 51 0.44% CYP51G1 49 0.42% MCT/IspD 49 0.42% CPD/CYP90A1 48 0.42% 8HGO 47 0.41% PAL 45 0.39% 7DLH 43 0.37% NCS 42 0.36% BR6OX1/CYP85A1 39 0.34% DFR 38 0.33% CPR 33 0.29% AACT 32 0.28% ANS/LDOX 31 0.27% COR 30 0.26% PMT 30 0.26% CNMT 29 0.25% SQE 28 0.24% FPPS 28 0.24% MPO 27 0.23% ROT3/CYP90C1 24 0.21% SQS/FDFT1 23 0.2% MVD 23 0.2% CHI 21 0.18% TYDC_DDC 20 0.17% CCoAOMT 20 0.17% SMO1/SMO2 20 0.17% CYP719 19 0.16% CYP80B1 19 0.16% MVK 18 0.16% ADC 15 0.13% CHS 15 0.13% DXS 15 0.13% CYP80F1 14 0.12% HPPR 14 0.12% DWF7 14 0.12% XMT_MXMT_DXMT 11 0.1% ISY 10 0.09% DET2 9 0.08% CMK/IspE 9 0.08% TDC 8 0.07% IDI 8 0.07% HMGR 7 0.06% DXR 7 0.06% CPI1 5 0.04% MDS/IspF 5 0.04% FLS 4 0.03% HDS/IspG 4 0.03% HMGS 4 0.03% PMK 4 0.03% DWF1 3 0.03% HYD1 3 0.03% DWF5 3 0.03% FK 3 0.03% HDR/IspH 3 0.03% 6OMT_4OMT_SOMT 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1387 20 BAHD (609) View species results
Alkaloid pathway 1089 21 NMT (202) View species results
Phenylpropanoid pathway 915 11 POD (421) View species results
Flavonoid pathway 567 9 UFGT (363) View species results
Rosmarinic acid pathway 366 7 C4H (136) View species results
Steroid pathway 357 14 SMT1/SMT2/SMT3 (141) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4417 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 880 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
XP_019094205.1 Alkaloid H6H low borderline
XP_019094240.1 Alkaloid H6H low borderline
XP_019094311.1 Alkaloid H6H medium borderline
XP_019094591.1 Alkaloid H6H low borderline
XP_019094847.1 Alkaloid H6H low borderline
XP_019094888.1 Alkaloid H6H low borderline
XP_019095016.1 Alkaloid H6H low borderline
XP_019095508.1 Alkaloid H6H medium borderline
XP_019095681.1 Alkaloid H6H medium pass
XP_019096566.1 Alkaloid H6H low borderline
XP_019096751.1 Alkaloid H6H low borderline
XP_019098864.1 Alkaloid H6H medium borderline
XP_019098983.1 Alkaloid H6H low borderline
XP_019100770.1 Alkaloid H6H low borderline
XP_019101764.1 Alkaloid H6H low borderline