Camelina sativa (camelina_sativa)
Imported from atlas release summary for Camelina sativa.
4681
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
4681
Candidate Genes
BAHD
6.33%
C4H
6.22%
C3'H/CYP98A
5.92%
4CL
4.08%
CYP76
4.08%
POD
3.85%
IFS
3.82%
UGT
3.43%
Other Families
62.26%
More Families (96)
UFGT
386
3.34%
7DLGT
378
3.27%
T3O
342
2.96%
NMT
341
2.95%
F3H
314
2.72%
DWF4/CYP90B1
273
2.36%
BR6OX2/CYP85A2
260
2.25%
F3'H/CYP75B
217
1.88%
STR
213
1.84%
SMT1/SMT2/SMT3
211
1.83%
TRI/TRII
184
1.59%
CYP71
178
1.54%
CODM/T6ODM
167
1.45%
SGD
166
1.44%
H6H
165
1.43%
CAS
141
1.22%
T16H
136
1.18%
CAD
136
1.18%
IFR
127
1.1%
BBE
126
1.09%
CSE
120
1.04%
PYKS
100
0.87%
ANR
90
0.78%
LAC
90
0.78%
RAS
84
0.73%
GES
79
0.68%
IO
79
0.68%
SLS
78
0.68%
F5H/CYP84A
78
0.68%
CYP90D1
78
0.68%
TPS
78
0.68%
FNS
73
0.63%
G8O/G8H
70
0.61%
COMT
70
0.61%
TAT
70
0.61%
CCR
69
0.6%
HCT
64
0.55%
GS
62
0.54%
GGPPS
62
0.54%
LAMT
58
0.5%
F3'5'H/CYP75A
57
0.49%
16OMT
51
0.44%
CYP51G1
49
0.42%
MCT/IspD
49
0.42%
CPD/CYP90A1
48
0.42%
8HGO
47
0.41%
PAL
45
0.39%
7DLH
43
0.37%
NCS
42
0.36%
BR6OX1/CYP85A1
39
0.34%
DFR
38
0.33%
CPR
33
0.29%
AACT
32
0.28%
ANS/LDOX
31
0.27%
COR
30
0.26%
PMT
30
0.26%
CNMT
29
0.25%
SQE
28
0.24%
FPPS
28
0.24%
MPO
27
0.23%
ROT3/CYP90C1
24
0.21%
SQS/FDFT1
23
0.2%
MVD
23
0.2%
CHI
21
0.18%
TYDC_DDC
20
0.17%
CCoAOMT
20
0.17%
SMO1/SMO2
20
0.17%
CYP719
19
0.16%
CYP80B1
19
0.16%
MVK
18
0.16%
ADC
15
0.13%
CHS
15
0.13%
DXS
15
0.13%
CYP80F1
14
0.12%
HPPR
14
0.12%
DWF7
14
0.12%
XMT_MXMT_DXMT
11
0.1%
ISY
10
0.09%
DET2
9
0.08%
CMK/IspE
9
0.08%
TDC
8
0.07%
IDI
8
0.07%
HMGR
7
0.06%
DXR
7
0.06%
CPI1
5
0.04%
MDS/IspF
5
0.04%
FLS
4
0.03%
HDS/IspG
4
0.03%
HMGS
4
0.03%
PMK
4
0.03%
DWF1
3
0.03%
HYD1
3
0.03%
DWF5
3
0.03%
FK
3
0.03%
HDR/IspH
3
0.03%
6OMT_4OMT_SOMT
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1387 | 20 | BAHD (609) | View species results |
| Alkaloid pathway | 1089 | 21 | NMT (202) | View species results |
| Phenylpropanoid pathway | 915 | 11 | POD (421) | View species results |
| Flavonoid pathway | 567 | 9 | UFGT (363) | View species results |
| Rosmarinic acid pathway | 366 | 7 | C4H (136) | View species results |
| Steroid pathway | 357 | 14 | SMT1/SMT2/SMT3 (141) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 4417 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 880 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| XP_010448382.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010452592.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010453438.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010454213.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010454464.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_010458085.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_010459040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010459042.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010459043.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010459089.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010459090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010459091.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010459397.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010461977.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010461981.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010462229.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010462230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010462231.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010463057.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010465139.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010465656.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010466325.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010467187.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010469307.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_010469308.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_010470178.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010471215.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010471490.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_010471491.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_010471492.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| XP_010473961.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010474041.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010475646.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_010476601.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010476642.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010476947.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010478591.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010479628.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010479632.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010479884.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010479898.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010479899.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010482662.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010487069.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010487490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010488094.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010488858.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010488915.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| XP_010491222.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| XP_010492119.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |