PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

4400
Candidate Protein Records
3645
Pathway-Level Records
9305
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
GbarD02G0009590 Alkaloid IO low borderline
GbarD02G0017090 Alkaloid IO low borderline
GbarD03G0009720 Alkaloid IO medium borderline
GbarD04G0011690 Alkaloid IO medium borderline
GbarD05G0004210 Alkaloid IO medium borderline
GbarD05G0006910 Alkaloid IO medium borderline
GbarD05G0010990 Alkaloid IO medium pass
GbarD05G0015250 Alkaloid IO low borderline
GbarD05G0020150 Alkaloid IO medium borderline
GbarD05G0026400 Alkaloid IO low borderline
GbarD06G0001100 Alkaloid IO low borderline
GbarD06G0001170 Alkaloid IO medium borderline
GbarD06G0001180 Alkaloid IO medium borderline
GbarD06G0001240 Alkaloid IO medium borderline
GbarD06G0023690 Alkaloid IO medium borderline
GbarD07G0013020 Alkaloid IO medium borderline
GbarD08G0015100 Alkaloid IO medium borderline
GbarD09G0013720 Alkaloid IO low borderline
GbarD09G0015380 Alkaloid IO medium borderline
GbarD10G0024610 Alkaloid IO medium borderline
GbarD10G0026170 Alkaloid IO medium borderline
GbarD10G0026190 Alkaloid IO medium borderline
GbarD11G0010680 Alkaloid IO medium borderline
GbarD11G0037080 Alkaloid IO medium borderline
GbarD12G0002470 Alkaloid IO low borderline
GbarD12G0004250 Alkaloid IO low borderline
GbarD12G0004280 Alkaloid IO low borderline
GbarD12G0028690 Alkaloid IO medium borderline
GbarD12G0028710 Alkaloid IO medium borderline
GbarD13G0009480 Alkaloid IO medium borderline
GbarD13G0013850 Alkaloid IO medium borderline
GbarA02G0008980 Alkaloid ISY medium pass
GbarA03G0020830 Alkaloid ISY medium pass
GbarA05G0020870 Alkaloid ISY medium pass
GbarA09G0008300 Alkaloid ISY medium pass
GbarA09G0008310 Alkaloid ISY medium pass
GbarA12G0020020 Alkaloid ISY medium pass
GbarA13G0022770 Alkaloid ISY medium pass
GbarD02G0009100 Alkaloid ISY high pass
GbarD02G0022510 Alkaloid ISY medium pass
GbarD05G0021180 Alkaloid ISY high pass
GbarD05G0021190 Alkaloid ISY medium pass
GbarD09G0007780 Alkaloid ISY medium pass
GbarD09G0007790 Alkaloid ISY medium pass
GbarD09G0007810 Alkaloid ISY medium pass
GbarD12G0019980 Alkaloid ISY medium pass
GbarD13G0022670 Alkaloid ISY high pass
GbarA01G0008160 Alkaloid LAMT medium borderline
GbarA03G0022040 Alkaloid LAMT medium borderline
GbarA05G0019170 Alkaloid LAMT medium borderline