PlantSME Plant secondary metabolism enzyme database

Gossypium barbadense (gossypium_barbadense)

Imported from atlas release summary for Gossypium barbadense.

3645
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1055 21 BAHD (388) View species results
Alkaloid pathway 824 25 7DLGT (140) View species results
Phenylpropanoid pathway 824 12 POD (325) View species results
Flavonoid pathway 411 13 UFGT (256) View species results
Rosmarinic acid pathway 307 7 C4H (123) View species results
Steroid pathway 224 12 CAS (104) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3759 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 675 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
GbarD12G0016760 Rosmarinic Acid 4CL medium pass
GbarD13G0009310 Rosmarinic Acid 4CL low borderline
GbarD13G0020080 Rosmarinic Acid 4CL medium pass
GbarD13G0025990 Rosmarinic Acid 4CL medium pass
Gbarscaffold257_obj_D020002830 Rosmarinic Acid 4CL medium pass
GbarA01G0003960 Rosmarinic Acid C4H low borderline
GbarA01G0003970 Rosmarinic Acid C4H low borderline
GbarA01G0003980 Rosmarinic Acid C4H low borderline
GbarA01G0006250 Rosmarinic Acid C4H medium pass
GbarA01G0006260 Rosmarinic Acid C4H low borderline
GbarA01G0007610 Rosmarinic Acid C4H low borderline
GbarA01G0008440 Rosmarinic Acid C4H low borderline
GbarA01G0008450 Rosmarinic Acid C4H medium pass
GbarA01G0008480 Rosmarinic Acid C4H low borderline
GbarA01G0008500 Rosmarinic Acid C4H low borderline
GbarA01G0008520 Rosmarinic Acid C4H low borderline
GbarA01G0008540 Rosmarinic Acid C4H medium pass
GbarA01G0008550 Rosmarinic Acid C4H low borderline
GbarA01G0008560 Rosmarinic Acid C4H low borderline
GbarA01G0009120 Rosmarinic Acid C4H low borderline
GbarA01G0011560 Rosmarinic Acid C4H low borderline
GbarA01G0017490 Rosmarinic Acid C4H low borderline
GbarA01G0019520 Rosmarinic Acid C4H low borderline
GbarA01G0021190 Rosmarinic Acid C4H medium pass
GbarA01G0021200 Rosmarinic Acid C4H medium pass
GbarA01G0021210 Rosmarinic Acid C4H medium pass
GbarA01G0021420 Rosmarinic Acid C4H medium pass
GbarA01G0022470 Rosmarinic Acid C4H low borderline
GbarA02G0000510 Rosmarinic Acid C4H medium pass
GbarA02G0002470 Rosmarinic Acid C4H low borderline
GbarA02G0002480 Rosmarinic Acid C4H low borderline
GbarA02G0002490 Rosmarinic Acid C4H low borderline
GbarA02G0002500 Rosmarinic Acid C4H low borderline
GbarA02G0002530 Rosmarinic Acid C4H low borderline
GbarA02G0002540 Rosmarinic Acid C4H low borderline
GbarA02G0002550 Rosmarinic Acid C4H low borderline
GbarA02G0002560 Rosmarinic Acid C4H low borderline
GbarA02G0002570 Rosmarinic Acid C4H low borderline
GbarA02G0006960 Rosmarinic Acid C4H low borderline
GbarA02G0009000 Rosmarinic Acid C4H medium pass
GbarA02G0009030 Rosmarinic Acid C4H medium pass
GbarA02G0010880 Rosmarinic Acid C4H low borderline
GbarA02G0013670 Rosmarinic Acid C4H low borderline
GbarA02G0016010 Rosmarinic Acid C4H low borderline
GbarA02G0016480 Rosmarinic Acid C4H medium pass
GbarA02G0017980 Rosmarinic Acid C4H low borderline
GbarA02G0018280 Rosmarinic Acid C4H medium pass
GbarA02G0018290 Rosmarinic Acid C4H low borderline
GbarA02G0019470 Rosmarinic Acid C4H low borderline
GbarA03G0001930 Rosmarinic Acid C4H low borderline