Hibiscus hamabo (hibiscus_hamabo)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.72% Phenylpropanoid pathway 23.94% Alkaloid pathway 20.15% Flavonoid pathway 11.51% Rosmarinic acid pathway 9.21% Steroid pathway 6.46%

Family Distribution

4039 Candidate Genes

C4H 6.55% C3'H/CYP98A 5.88% BAHD 5.79% CYP76 3.97% POD 3.88% 4CL 3.86% IFS 3.78% T3O 3.62%

Other Families 62.67%

More Families (97)

F3H 371 3.59% UGT 296 2.87% 7DLGT 258 2.5% UFGT 253 2.45% NMT 243 2.35% CODM/T6ODM 226 2.19% DWF4/CYP90B1 214 2.07% F3'H/CYP75B 205 1.99% BR6OX2/CYP85A2 204 1.98% H6H 198 1.92% STR 178 1.72% LAC 173 1.68% CAD 165 1.6% CAS 146 1.41% CYP71 144 1.39% SMT1/SMT2/SMT3 121 1.17% TRI/TRII 110 1.07% CYP90D1 110 1.07% TPS 110 1.07% CSE 101 0.98% HCT 100 0.97% GES 99 0.96% COMT 95 0.92% IFR 93 0.9% PYKS 83 0.8% T16H 83 0.8% IO 82 0.79% RAS 78 0.76% F5H/CYP84A 74 0.72% G8O/G8H 73 0.71% TAT 73 0.71% GS 71 0.69% BBE 70 0.68% ANR 70 0.68% 7DLH 69 0.67% CPD/CYP90A1 67 0.65% PAL 66 0.64% NCS 64 0.62% FNS 64 0.62% PMT 61 0.59% SLS 57 0.55% F3'5'H/CYP75A 57 0.55% 16OMT 55 0.53% ANS/LDOX 50 0.48% BR6OX1/CYP85A1 47 0.46% CCR 46 0.45% SGD 43 0.42% COR 42 0.41% CYP51G1 37 0.36% 8HGO 35 0.34% DFR 35 0.34% SQE 33 0.32% CNMT 31 0.3% CPR 28 0.27% FPPS 27 0.26% CCoAOMT 23 0.22% ROT3/CYP90C1 23 0.22% GGPPS 23 0.22% SMO1/SMO2 22 0.21% MPO 21 0.2% LAMT 21 0.2% DXS 21 0.2% AACT 20 0.19% HMGR 20 0.19% CHS 19 0.18% TYDC_DDC 18 0.17% ISY 17 0.16% CYP719 16 0.15% MVD 16 0.15% CYP80B1 14 0.14% SQS/FDFT1 14 0.14% MVK 14 0.14% HMGS 13 0.13% HPPR 12 0.12% IDI 11 0.11% TDC 10 0.1% CHI 10 0.1% XMT_MXMT_DXMT 8 0.08% ADC 8 0.08% DWF1 8 0.08% FLS 7 0.07% DET2 7 0.07% HDR/IspH 7 0.07% 6OMT_4OMT_SOMT 6 0.06% ODC 6 0.06% MCT/IspD 6 0.06% DXR 6 0.06% MDS/IspF 6 0.06% PMK 6 0.06% HYD1 5 0.05% HDS/IspG 5 0.05% FK 4 0.04% CPI1 4 0.04% DWF7 3 0.03% DWF5 3 0.03% CMK/IspE 3 0.03% GPPS 1 0.01%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	1160	21	BAHD (466)	View species results
Phenylpropanoid pathway	967	13	POD (369)	View species results
Alkaloid pathway	814	27	NMT (125)	View species results
Flavonoid pathway	465	14	UFGT (231)	View species results
Rosmarinic acid pathway	372	7	C4H (135)	View species results
Steroid pathway	261	15	CAS (118)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	4033	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	776	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: BAHD

Gene	Pathway	Family	Confidence	Status	Best Target
HhamSuperscaffold150181110	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
HhamSuperscaffold150182540	Terpenoid	BAHD	medium	pass	BAHD__00043__sp_Q52T38_ZDH22_ARATH
HhamSuperscaffold150186280	Terpenoid	BAHD	medium	pass	BAHD__00073__sp_Q9FF86_DCR_ARATH
HhamSuperscaffold150187930	Terpenoid	BAHD	medium	pass	BAHD__00086__sp_Q9M306_ZDH10_ARATH
HhamSuperscaffold150189830	Terpenoid	BAHD	medium	pass	BAHD__00051__sp_Q7XA86_ZDH11_ARATH
HhamSuperscaffold150194310	Terpenoid	BAHD	medium	pass	BAHD__00084__sp_Q9M115_ZDH16_ARATH
HhamSuperscaffold150194350	Terpenoid	BAHD	medium	pass	BAHD__00069__sp_Q9C5W0_DGAT3_ARATH
HhamSuperscaffold150195440	Terpenoid	BAHD	medium	pass	BAHD__00083__sp_Q9LMM0_GPAT4_ARATH
HhamSuperscaffold150195900	Terpenoid	BAHD	medium	pass	BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
HhamSuperscaffold150197410	Terpenoid	BAHD	medium	pass	BAHD__00021__sp_K7K424_DAT2D_SOYBN
HhamSuperscaffold150199200	Terpenoid	BAHD	medium	pass	BAHD__00034__sp_P10349_GPAT2_CUCMO
HhamSuperscaffold150200480	Terpenoid	BAHD	medium	pass	BAHD__00073__sp_Q9FF86_DCR_ARATH
HhamSuperscaffold160201430	Terpenoid	BAHD	medium	pass	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
HhamSuperscaffold160206130	Terpenoid	BAHD	medium	pass	BAHD__00027__sp_O80437_GPAT6_ARATH
HhamSuperscaffold160206160	Terpenoid	BAHD	medium	pass	BAHD__00073__sp_Q9FF86_DCR_ARATH
HhamSuperscaffold160209500	Terpenoid	BAHD	medium	pass	BAHD__00058__sp_Q8LG50_LPAT2_ARATH
HhamSuperscaffold160212510	Terpenoid	BAHD	medium	pass	BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
HhamSuperscaffold160212810	Terpenoid	BAHD	medium	pass	BAHD__00002__sp_A0A068BIF1_AT9_ACTER
HhamSuperscaffold160215440	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
HhamSuperscaffold160217880	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
HhamSuperscaffold160219480	Terpenoid	BAHD	medium	pass	BAHD__00075__sp_Q9FJB4_GPC1_ARATH
HhamSuperscaffold160219510	Terpenoid	BAHD	medium	pass	BAHD__00075__sp_Q9FJB4_GPC1_ARATH
HhamSuperscaffold170220950	Terpenoid	BAHD	medium	pass	BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
HhamSuperscaffold170221050	Terpenoid	BAHD	low	borderline	BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
HhamSuperscaffold170229430	Terpenoid	BAHD	medium	pass	BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
HhamSuperscaffold170229890	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
HhamSuperscaffold170229930	Terpenoid	BAHD	low	borderline	BAHD__00022__sp_K7PEY4_RAM2_MEDTR
HhamSuperscaffold170230920	Terpenoid	BAHD	medium	pass	BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
HhamSuperscaffold170230960	Terpenoid	BAHD	medium	pass	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
HhamSuperscaffold170231390	Terpenoid	BAHD	medium	pass	BAHD__00051__sp_Q7XA86_ZDH11_ARATH
HhamSuperscaffold170235480	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
HhamSuperscaffold170239260	Terpenoid	BAHD	low	borderline	BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
HhamSuperscaffold170239760	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
HhamSuperscaffold170241060	Terpenoid	BAHD	medium	pass	BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
HhamSuperscaffold170241780	Terpenoid	BAHD	medium	pass	BAHD__00032__sp_P0DO84_AT_STRNX
HhamSuperscaffold180245000	Terpenoid	BAHD	medium	pass	BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
HhamSuperscaffold180245040	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
HhamSuperscaffold180248640	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
HhamSuperscaffold180249780	Terpenoid	BAHD	low	borderline	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
HhamSuperscaffold180251730	Terpenoid	BAHD	medium	pass	BAHD__00024__sp_O23393_BIA1_ARATH
HhamSuperscaffold180253010	Terpenoid	BAHD	medium	pass	BAHD__00043__sp_Q52T38_ZDH22_ARATH
HhamSuperscaffold180256980	Terpenoid	BAHD	medium	pass	BAHD__00023__sp_O22975_LPAAT_ARATH
HhamSuperscaffold180257700	Terpenoid	BAHD	medium	pass	BAHD__00089__sp_Q9SB58_ZDH19_ARATH
HhamSuperscaffold180260850	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
HhamSuperscaffold180262580	Terpenoid	BAHD	medium	pass	BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
HhamSuperscaffold180262590	Terpenoid	BAHD	low	borderline	BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
HhamSuperscaffold180264210	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
HhamSuperscaffold180267790	Terpenoid	BAHD	medium	pass	BAHD__00043__sp_Q52T38_ZDH22_ARATH
HhamSuperscaffold180268470	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
HhamSuperscaffold190276760	Terpenoid	BAHD	medium	pass	BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH