PlantSME Plant secondary metabolism enzyme database

Hibiscus hamabo (hibiscus_hamabo)

Imported from atlas release summary for Hibiscus hamabo.

4039
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1160 21 BAHD (466) View species results
Phenylpropanoid pathway 967 13 POD (369) View species results
Alkaloid pathway 814 27 NMT (125) View species results
Flavonoid pathway 465 14 UFGT (231) View species results
Rosmarinic acid pathway 372 7 C4H (135) View species results
Steroid pathway 261 15 CAS (118) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 4033 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 776 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
Reset
Gene Pathway Family Confidence Status Best Target
HhamSuperscaffold10010460 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold160215310 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold160216900 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold170224550 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold200345380 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold20291890 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold20291900 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold20293460 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold20305590 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold20332780 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
HhamSuperscaffold20332790 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold210367640 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold220374050 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold220378830 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold220388640 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold230412550 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold240420440 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold240425150 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold270480030 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold270480970 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold300585050 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30542430 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30542440 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30542450 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30542460 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30542470 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30557600 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30557610 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30572260 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30572560 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30572570 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30572580 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30572590 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold30572600 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold310605730 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold310617670 Alkaloid NCS medium pass NCS__00002__sp_A2A1A1_NCS2_COPJA
HhamSuperscaffold310617680 Alkaloid NCS medium pass NCS__00002__sp_A2A1A1_NCS2_COPJA
HhamSuperscaffold310617690 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold320626480 Alkaloid NCS medium pass NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold320634170 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold350671030 Alkaloid NCS medium pass NCS__00004__sp_Q4QTJ2_NCS1_PAPSO
HhamSuperscaffold350679400 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold370713180 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold380730170 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold380730200 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold380730300 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold380730320 Alkaloid NCS low borderline NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
HhamSuperscaffold390738930 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold400787050 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
HhamSuperscaffold400789890 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA