Hibiscus hamabo (hibiscus_hamabo)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.72% Phenylpropanoid pathway 23.94% Alkaloid pathway 20.15% Flavonoid pathway 11.51% Rosmarinic acid pathway 9.21% Steroid pathway 6.46%

Family Distribution

4039 Candidate Genes

C4H 6.55% C3'H/CYP98A 5.88% BAHD 5.79% CYP76 3.97% POD 3.88% 4CL 3.86% IFS 3.78% T3O 3.62%

Other Families 62.67%

More Families (97)

F3H 371 3.59% UGT 296 2.87% 7DLGT 258 2.5% UFGT 253 2.45% NMT 243 2.35% CODM/T6ODM 226 2.19% DWF4/CYP90B1 214 2.07% F3'H/CYP75B 205 1.99% BR6OX2/CYP85A2 204 1.98% H6H 198 1.92% STR 178 1.72% LAC 173 1.68% CAD 165 1.6% CAS 146 1.41% CYP71 144 1.39% SMT1/SMT2/SMT3 121 1.17% TRI/TRII 110 1.07% CYP90D1 110 1.07% TPS 110 1.07% CSE 101 0.98% HCT 100 0.97% GES 99 0.96% COMT 95 0.92% IFR 93 0.9% PYKS 83 0.8% T16H 83 0.8% IO 82 0.79% RAS 78 0.76% F5H/CYP84A 74 0.72% G8O/G8H 73 0.71% TAT 73 0.71% GS 71 0.69% BBE 70 0.68% ANR 70 0.68% 7DLH 69 0.67% CPD/CYP90A1 67 0.65% PAL 66 0.64% NCS 64 0.62% FNS 64 0.62% PMT 61 0.59% SLS 57 0.55% F3'5'H/CYP75A 57 0.55% 16OMT 55 0.53% ANS/LDOX 50 0.48% BR6OX1/CYP85A1 47 0.46% CCR 46 0.45% SGD 43 0.42% COR 42 0.41% CYP51G1 37 0.36% 8HGO 35 0.34% DFR 35 0.34% SQE 33 0.32% CNMT 31 0.3% CPR 28 0.27% FPPS 27 0.26% CCoAOMT 23 0.22% ROT3/CYP90C1 23 0.22% GGPPS 23 0.22% SMO1/SMO2 22 0.21% MPO 21 0.2% LAMT 21 0.2% DXS 21 0.2% AACT 20 0.19% HMGR 20 0.19% CHS 19 0.18% TYDC_DDC 18 0.17% ISY 17 0.16% CYP719 16 0.15% MVD 16 0.15% CYP80B1 14 0.14% SQS/FDFT1 14 0.14% MVK 14 0.14% HMGS 13 0.13% HPPR 12 0.12% IDI 11 0.11% TDC 10 0.1% CHI 10 0.1% XMT_MXMT_DXMT 8 0.08% ADC 8 0.08% DWF1 8 0.08% FLS 7 0.07% DET2 7 0.07% HDR/IspH 7 0.07% 6OMT_4OMT_SOMT 6 0.06% ODC 6 0.06% MCT/IspD 6 0.06% DXR 6 0.06% MDS/IspF 6 0.06% PMK 6 0.06% HYD1 5 0.05% HDS/IspG 5 0.05% FK 4 0.04% CPI1 4 0.04% DWF7 3 0.03% DWF5 3 0.03% CMK/IspE 3 0.03% GPPS 1 0.01%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	1160	21	BAHD (466)	View species results
Phenylpropanoid pathway	967	13	POD (369)	View species results
Alkaloid pathway	814	27	NMT (125)	View species results
Flavonoid pathway	465	14	UFGT (231)	View species results
Rosmarinic acid pathway	372	7	C4H (135)	View species results
Steroid pathway	261	15	CAS (118)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	4033	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	776	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
HhamSuperscaffold250449650	Alkaloid	NMT	low	borderline	NMT__00055__sp_Q9FNC7_SUVR2_ARATH
HhamSuperscaffold250452140	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
HhamSuperscaffold250453010	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
HhamSuperscaffold250457800	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
HhamSuperscaffold250461580	Alkaloid	NMT	low	borderline	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
HhamSuperscaffold260467780	Alkaloid	NMT	medium	pass	NMT__00025__sp_P93831_CLF_ARATH
HhamSuperscaffold260472240	Alkaloid	NMT	medium	pass	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
HhamSuperscaffold260475180	Alkaloid	NMT	medium	borderline	NMT__00038__sp_Q84PP7_MXMT2_COFAR
HhamSuperscaffold270482400	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
HhamSuperscaffold270483940	Alkaloid	NMT	medium	pass	NMT__00017__sp_F4K1J4_ATXR7_ARATH
HhamSuperscaffold270493150	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
HhamSuperscaffold270493210	Alkaloid	NMT	medium	borderline	NMT__00070__sp_W5U2K2_NMT_CATRO
HhamSuperscaffold280494200	Alkaloid	NMT	medium	pass	NMT__00041__sp_Q8GWT4_ANM15_ARATH
HhamSuperscaffold280498760	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
HhamSuperscaffold280506410	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
HhamSuperscaffold280506690	Alkaloid	NMT	medium	borderline	NMT__00011__sp_A9X7L0_ANMT_RUTGR
HhamSuperscaffold290512440	Alkaloid	NMT	medium	pass	NMT__00020__sp_O23372_ATXR3_ARATH
HhamSuperscaffold290515120	Alkaloid	NMT	medium	pass	NMT__00068__sp_Q9XI84_RBCMT_ARATH
HhamSuperscaffold290516150	Alkaloid	NMT	medium	pass	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
HhamSuperscaffold290517720	Alkaloid	NMT	medium	pass	NMT__00017__sp_F4K1J4_ATXR7_ARATH
HhamSuperscaffold30539380	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
HhamSuperscaffold30544010	Alkaloid	NMT	medium	pass	NMT__00021__sp_O64827_SUVR5_ARATH
HhamSuperscaffold30548660	Alkaloid	NMT	medium	pass	NMT__00016__sp_F4JNX3_CMKMT_ARATH
HhamSuperscaffold30549290	Alkaloid	NMT	medium	pass	NMT__00021__sp_O64827_SUVR5_ARATH
HhamSuperscaffold30557450	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
HhamSuperscaffold30561320	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
HhamSuperscaffold30562710	Alkaloid	NMT	medium	borderline	NMT__00050__sp_Q944H0_PEAM2_ARATH
HhamSuperscaffold30566930	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
HhamSuperscaffold30566960	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
HhamSuperscaffold30572420	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
HhamSuperscaffold30577920	Alkaloid	NMT	medium	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
HhamSuperscaffold310601350	Alkaloid	NMT	medium	pass	NMT__00050__sp_Q944H0_PEAM2_ARATH
HhamSuperscaffold310603590	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
HhamSuperscaffold310609940	Alkaloid	NMT	low	borderline	NMT__00065__sp_Q9SEH7_PMT2_TOBAC
HhamSuperscaffold310612060	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
HhamSuperscaffold310612080	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
HhamSuperscaffold310617050	Alkaloid	NMT	medium	borderline	NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB
HhamSuperscaffold320620070	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
HhamSuperscaffold320620730	Alkaloid	NMT	medium	pass	NMT__00067__sp_Q9T0G7_SUVH9_ARATH
HhamSuperscaffold320626730	Alkaloid	NMT	medium	pass	NMT__00040__sp_Q84WW6_ASHH1_ARATH
HhamSuperscaffold330648450	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
HhamSuperscaffold330648460	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
HhamSuperscaffold330648500	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
HhamSuperscaffold330648510	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
HhamSuperscaffold340656260	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
HhamSuperscaffold340660810	Alkaloid	NMT	medium	pass	NMT__00048__sp_Q8W595_SUVR4_ARATH
HhamSuperscaffold340667670	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
HhamSuperscaffold350670920	Alkaloid	NMT	medium	pass	NMT__00049__sp_Q93YF5_SUVH1_TOBAC
HhamSuperscaffold350676690	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
HhamSuperscaffold350678170	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH