Hibiscus hamabo (hibiscus_hamabo)
Imported from atlas release summary for Hibiscus hamabo.
4039
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
4039
Candidate Genes
C4H
6.55%
C3'H/CYP98A
5.88%
BAHD
5.79%
CYP76
3.97%
POD
3.88%
4CL
3.86%
IFS
3.78%
T3O
3.62%
Other Families
62.67%
More Families (97)
F3H
371
3.59%
UGT
296
2.87%
7DLGT
258
2.5%
UFGT
253
2.45%
NMT
243
2.35%
CODM/T6ODM
226
2.19%
DWF4/CYP90B1
214
2.07%
F3'H/CYP75B
205
1.99%
BR6OX2/CYP85A2
204
1.98%
H6H
198
1.92%
STR
178
1.72%
LAC
173
1.68%
CAD
165
1.6%
CAS
146
1.41%
CYP71
144
1.39%
SMT1/SMT2/SMT3
121
1.17%
TRI/TRII
110
1.07%
CYP90D1
110
1.07%
TPS
110
1.07%
CSE
101
0.98%
HCT
100
0.97%
GES
99
0.96%
COMT
95
0.92%
IFR
93
0.9%
PYKS
83
0.8%
T16H
83
0.8%
IO
82
0.79%
RAS
78
0.76%
F5H/CYP84A
74
0.72%
G8O/G8H
73
0.71%
TAT
73
0.71%
GS
71
0.69%
BBE
70
0.68%
ANR
70
0.68%
7DLH
69
0.67%
CPD/CYP90A1
67
0.65%
PAL
66
0.64%
NCS
64
0.62%
FNS
64
0.62%
PMT
61
0.59%
SLS
57
0.55%
F3'5'H/CYP75A
57
0.55%
16OMT
55
0.53%
ANS/LDOX
50
0.48%
BR6OX1/CYP85A1
47
0.46%
CCR
46
0.45%
SGD
43
0.42%
COR
42
0.41%
CYP51G1
37
0.36%
8HGO
35
0.34%
DFR
35
0.34%
SQE
33
0.32%
CNMT
31
0.3%
CPR
28
0.27%
FPPS
27
0.26%
CCoAOMT
23
0.22%
ROT3/CYP90C1
23
0.22%
GGPPS
23
0.22%
SMO1/SMO2
22
0.21%
MPO
21
0.2%
LAMT
21
0.2%
DXS
21
0.2%
AACT
20
0.19%
HMGR
20
0.19%
CHS
19
0.18%
TYDC_DDC
18
0.17%
ISY
17
0.16%
CYP719
16
0.15%
MVD
16
0.15%
CYP80B1
14
0.14%
SQS/FDFT1
14
0.14%
MVK
14
0.14%
HMGS
13
0.13%
HPPR
12
0.12%
IDI
11
0.11%
TDC
10
0.1%
CHI
10
0.1%
XMT_MXMT_DXMT
8
0.08%
ADC
8
0.08%
DWF1
8
0.08%
FLS
7
0.07%
DET2
7
0.07%
HDR/IspH
7
0.07%
6OMT_4OMT_SOMT
6
0.06%
ODC
6
0.06%
MCT/IspD
6
0.06%
DXR
6
0.06%
MDS/IspF
6
0.06%
PMK
6
0.06%
HYD1
5
0.05%
HDS/IspG
5
0.05%
FK
4
0.04%
CPI1
4
0.04%
DWF7
3
0.03%
DWF5
3
0.03%
CMK/IspE
3
0.03%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1160 | 21 | BAHD (466) | View species results |
| Phenylpropanoid pathway | 967 | 13 | POD (369) | View species results |
| Alkaloid pathway | 814 | 27 | NMT (125) | View species results |
| Flavonoid pathway | 465 | 14 | UFGT (231) | View species results |
| Rosmarinic acid pathway | 372 | 7 | C4H (135) | View species results |
| Steroid pathway | 261 | 15 | CAS (118) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 4033 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 776 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| HhamSuperscaffold330639440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold340662540 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold340668180 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold340668190 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold360690070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold360696970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold370700530 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold370709960 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold370710660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold370711670 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold370712620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold380717600 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold380723220 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold380723880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold380732670 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold390735620 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| HhamSuperscaffold390736630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold400789980 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold400791860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold400791870 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold40749270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold40750060 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| HhamSuperscaffold40764420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold40767470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold40770850 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold40770860 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold40773700 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold410803470 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| HhamSuperscaffold410805080 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| HhamSuperscaffold410813550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold420815150 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold420815160 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold420823410 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| HhamSuperscaffold430844590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold430845140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold440859260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold450862340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold450870260 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold450870270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold460877900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold460884480 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold460884490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold50891040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold50891650 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold50906690 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold50915510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold50919780 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold60928170 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold60931050 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold60938640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |