Hibiscus hamabo (hibiscus_hamabo)
Imported from atlas release summary for Hibiscus hamabo.
5069
Candidate Protein Records
4039
Pathway-Level Records
10326
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
10326
Family-Level Calls
C4H
6.55%
C3'H/CYP98A
5.88%
BAHD
5.79%
CYP76
3.97%
POD
3.88%
4CL
3.86%
IFS
3.78%
T3O
3.62%
Other Families
62.67%
More Families (97)
F3H
371
3.59%
UGT
296
2.87%
7DLGT
258
2.5%
UFGT
253
2.45%
NMT
243
2.35%
CODM/T6ODM
226
2.19%
DWF4/CYP90B1
214
2.07%
F3'H/CYP75B
205
1.99%
BR6OX2/CYP85A2
204
1.98%
H6H
198
1.92%
STR
178
1.72%
LAC
173
1.68%
CAD
165
1.6%
CAS
146
1.41%
CYP71
144
1.39%
SMT1/SMT2/SMT3
121
1.17%
TRI/TRII
110
1.07%
CYP90D1
110
1.07%
TPS
110
1.07%
CSE
101
0.98%
HCT
100
0.97%
GES
99
0.96%
COMT
95
0.92%
IFR
93
0.9%
PYKS
83
0.8%
T16H
83
0.8%
IO
82
0.79%
RAS
78
0.76%
F5H/CYP84A
74
0.72%
G8O/G8H
73
0.71%
TAT
73
0.71%
GS
71
0.69%
BBE
70
0.68%
ANR
70
0.68%
7DLH
69
0.67%
CPD/CYP90A1
67
0.65%
PAL
66
0.64%
NCS
64
0.62%
FNS
64
0.62%
PMT
61
0.59%
SLS
57
0.55%
F3'5'H/CYP75A
57
0.55%
16OMT
55
0.53%
ANS/LDOX
50
0.48%
BR6OX1/CYP85A1
47
0.46%
CCR
46
0.45%
SGD
43
0.42%
COR
42
0.41%
CYP51G1
37
0.36%
8HGO
35
0.34%
DFR
35
0.34%
SQE
33
0.32%
CNMT
31
0.3%
CPR
28
0.27%
FPPS
27
0.26%
CCoAOMT
23
0.22%
ROT3/CYP90C1
23
0.22%
GGPPS
23
0.22%
SMO1/SMO2
22
0.21%
MPO
21
0.2%
LAMT
21
0.2%
DXS
21
0.2%
AACT
20
0.19%
HMGR
20
0.19%
CHS
19
0.18%
TYDC_DDC
18
0.17%
ISY
17
0.16%
CYP719
16
0.15%
MVD
16
0.15%
CYP80B1
14
0.14%
SQS/FDFT1
14
0.14%
MVK
14
0.14%
HMGS
13
0.13%
HPPR
12
0.12%
IDI
11
0.11%
TDC
10
0.1%
CHI
10
0.1%
XMT_MXMT_DXMT
8
0.08%
ADC
8
0.08%
DWF1
8
0.08%
FLS
7
0.07%
DET2
7
0.07%
HDR/IspH
7
0.07%
6OMT_4OMT_SOMT
6
0.06%
ODC
6
0.06%
MCT/IspD
6
0.06%
DXR
6
0.06%
MDS/IspF
6
0.06%
PMK
6
0.06%
HYD1
5
0.05%
HDS/IspG
5
0.05%
FK
4
0.04%
CPI1
4
0.04%
DWF7
3
0.03%
DWF5
3
0.03%
CMK/IspE
3
0.03%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1160 | 21 | BAHD (466) | View species results |
| Phenylpropanoid pathway | 967 | 13 | POD (369) | View species results |
| Alkaloid pathway | 814 | 27 | NMT (125) | View species results |
| Flavonoid pathway | 465 | 14 | UFGT (231) | View species results |
| Rosmarinic acid pathway | 372 | 7 | C4H (135) | View species results |
| Steroid pathway | 261 | 15 | CAS (118) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 4033 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 776 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| HhamSuperscaffold160216270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold160218090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold170231330 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold170231340 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold170234660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold170236590 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold180248980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold180257980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold180258530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold180266690 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold180267640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold190283740 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold200338120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold200338130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold200341040 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold200347010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold20326070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold20332710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold20333410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold210357570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold210357710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold220371630 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold220371640 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| HhamSuperscaffold220378050 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold220379440 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| HhamSuperscaffold220379450 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold220380490 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold220380580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold220387400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold220387410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold220390580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold230403530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold230404850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold230411370 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold240416530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold240441490 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold250443910 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold250447100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold250451760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold250452940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold250453460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold260465860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold260465870 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold260475570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold270479450 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| HhamSuperscaffold270491490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold280494340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold280497120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold280498960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| HhamSuperscaffold280507350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |