PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
OBART01G44040.1 Alkaloid T3O medium pass
OBART01G44410.1 Alkaloid T3O medium pass
OBART02G00790.1 Alkaloid T3O low borderline
OBART02G06380.1 Alkaloid T3O medium borderline
OBART02G06380.2 Alkaloid T3O medium borderline
OBART02G06400.1 Alkaloid T3O medium borderline
OBART02G06420.1 Alkaloid T3O medium borderline
OBART02G06450.1 Alkaloid T3O medium pass
OBART02G06450.2 Alkaloid T3O medium pass
OBART02G06450.3 Alkaloid T3O medium pass
OBART02G06480.1 Alkaloid T3O medium borderline
OBART02G08790.1 Alkaloid T3O medium pass
OBART02G14540.1 Alkaloid T3O low borderline
OBART02G14940.1 Alkaloid T3O medium borderline
OBART02G17500.1 Alkaloid T3O medium borderline
OBART02G17550.1 Alkaloid T3O medium borderline
OBART02G17560.1 Alkaloid T3O medium borderline
OBART02G18970.1 Alkaloid T3O medium borderline
OBART02G21170.1 Alkaloid T3O medium borderline
OBART02G21200.1 Alkaloid T3O medium borderline
OBART02G21240.1 Alkaloid T3O medium borderline
OBART02G21260.1 Alkaloid T3O medium borderline
OBART02G21270.1 Alkaloid T3O medium borderline
OBART02G21340.1 Alkaloid T3O medium borderline
OBART02G22770.1 Alkaloid T3O medium pass
OBART02G23050.1 Alkaloid T3O medium borderline
OBART02G27120.1 Alkaloid T3O low borderline
OBART02G29320.1 Alkaloid T3O medium pass
OBART02G37380.1 Alkaloid T3O medium pass
OBART02G37380.2 Alkaloid T3O medium pass
OBART02G37380.3 Alkaloid T3O medium pass
OBART02G37380.4 Alkaloid T3O medium pass
OBART02G37380.5 Alkaloid T3O medium pass
OBART02G37380.6 Alkaloid T3O medium pass
OBART03G03020.1 Alkaloid T3O medium pass
OBART03G03130.1 Alkaloid T3O medium pass
OBART03G03140.1 Alkaloid T3O low borderline
OBART03G03160.1 Alkaloid T3O low borderline
OBART03G03170.1 Alkaloid T3O medium pass
OBART03G05120.1 Alkaloid T3O low borderline
OBART03G08890.1 Alkaloid T3O low borderline
OBART03G09250.1 Alkaloid T3O medium pass
OBART03G10580.1 Alkaloid T3O medium borderline
OBART03G10590.1 Alkaloid T3O medium borderline
OBART03G16200.1 Alkaloid T3O medium pass
OBART03G16200.2 Alkaloid T3O medium pass
OBART03G24910.1 Alkaloid T3O medium borderline
OBART03G25000.1 Alkaloid T3O medium borderline
OBART03G25030.1 Alkaloid T3O medium borderline
OBART03G25440.1 Alkaloid T3O medium pass