PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
OBART07G26500.1 Alkaloid T3O medium pass
OBART08G00410.1 Alkaloid T3O medium borderline
OBART08G00430.1 Alkaloid T3O medium borderline
OBART08G00450.1 Alkaloid T3O medium borderline
OBART08G00470.1 Alkaloid T3O medium borderline
OBART08G06550.1 Alkaloid T3O medium borderline
OBART08G08130.1 Alkaloid T3O medium pass
OBART08G08160.1 Alkaloid T3O medium pass
OBART08G19870.1 Alkaloid T3O medium borderline
OBART08G22660.1 Alkaloid T3O medium borderline
OBART09G02750.1 Alkaloid T3O medium borderline
OBART09G02770.1 Alkaloid T3O medium borderline
OBART09G03240.1 Alkaloid T3O medium borderline
OBART09G11770.1 Alkaloid T3O medium borderline
OBART09G11790.1 Alkaloid T3O medium borderline
OBART09G11790.2 Alkaloid T3O medium borderline
OBART09G11800.1 Alkaloid T3O medium borderline
OBART09G17380.1 Alkaloid T3O medium borderline
OBART09G17380.2 Alkaloid T3O medium borderline
OBART10G03440.1 Alkaloid T3O medium borderline
OBART10G03550.1 Alkaloid T3O medium borderline
OBART10G03820.2 Alkaloid T3O medium borderline
OBART10G03850.1 Alkaloid T3O medium borderline
OBART10G03940.1 Alkaloid T3O low borderline
OBART10G04830.1 Alkaloid T3O medium borderline
OBART10G11340.1 Alkaloid T3O medium pass
OBART10G13830.1 Alkaloid T3O medium pass
OBART10G15460.1 Alkaloid T3O medium borderline
OBART10G15650.1 Alkaloid T3O medium borderline
OBART10G16360.1 Alkaloid T3O medium pass
OBART10G16360.2 Alkaloid T3O medium pass
OBART10G16370.1 Alkaloid T3O medium pass
OBART11G02640.1 Alkaloid T3O medium pass
OBART11G13010.1 Alkaloid T3O medium borderline
OBART11G13110.1 Alkaloid T3O medium borderline
OBART12G01000.1 Alkaloid T3O medium pass
OBART12G01000.2 Alkaloid T3O medium pass
OBART12G02040.1 Alkaloid T3O low borderline
OBART12G02340.1 Alkaloid T3O medium pass
OBART12G07920.1 Alkaloid T3O medium borderline
OBART12G08870.1 Alkaloid T3O low borderline
OBART12G13570.1 Alkaloid T3O medium borderline
OBART12G17060.1 Alkaloid T3O medium borderline
OBART02G19630.1 Alkaloid TDC low borderline
OBART04G01430.1 Alkaloid TDC low borderline
OBART04G23480.1 Alkaloid TDC low borderline
OBART08G02500.1 Alkaloid TDC medium borderline
OBART10G00290.1 Alkaloid TDC low borderline
OBART11G13260.1 Alkaloid TDC low borderline
OBART01G42800.1 Alkaloid TRI/TRII low borderline