PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
OBART04G07560.1 Alkaloid 7DLGT medium pass
OBART04G14430.1 Alkaloid 7DLGT high pass
OBART04G18040.1 Alkaloid 7DLGT medium pass
OBART04G19100.1 Alkaloid 7DLGT low borderline
OBART04G19170.1 Alkaloid 7DLGT low borderline
OBART04G21240.1 Alkaloid 7DLGT low borderline
OBART04G21260.1 Alkaloid 7DLGT low borderline
OBART04G21820.1 Alkaloid 7DLGT medium pass
OBART04G21830.1 Alkaloid 7DLGT low borderline
OBART05G00660.1 Alkaloid 7DLGT low borderline
OBART05G05170.1 Alkaloid 7DLGT low borderline
OBART05G05190.1 Alkaloid 7DLGT low borderline
OBART05G07310.1 Alkaloid 7DLGT medium pass
OBART05G21330.1 Alkaloid 7DLGT low borderline
OBART05G21780.1 Alkaloid 7DLGT low borderline
OBART05G21790.1 Alkaloid 7DLGT low borderline
OBART05G23410.1 Alkaloid 7DLGT medium pass
OBART05G23420.1 Alkaloid 7DLGT medium pass
OBART05G23430.1 Alkaloid 7DLGT low borderline
OBART05G23440.1 Alkaloid 7DLGT low borderline
OBART05G23450.1 Alkaloid 7DLGT low borderline
OBART05G23460.1 Alkaloid 7DLGT low borderline
OBART05G23470.1 Alkaloid 7DLGT low borderline
OBART05G23470.3 Alkaloid 7DLGT low borderline
OBART05G25050.1 Alkaloid 7DLGT low borderline
OBART06G07050.1 Alkaloid 7DLGT low borderline
OBART06G07060.1 Alkaloid 7DLGT medium pass
OBART06G07360.1 Alkaloid 7DLGT low borderline
OBART06G07370.1 Alkaloid 7DLGT low borderline
OBART06G07670.1 Alkaloid 7DLGT medium pass
OBART06G10400.1 Alkaloid 7DLGT medium pass
OBART06G10860.1 Alkaloid 7DLGT medium pass
OBART06G10890.1 Alkaloid 7DLGT low borderline
OBART06G11240.1 Alkaloid 7DLGT medium pass
OBART06G11290.1 Alkaloid 7DLGT medium pass
OBART06G11320.1 Alkaloid 7DLGT low borderline
OBART06G11330.1 Alkaloid 7DLGT low borderline
OBART06G11370.1 Alkaloid 7DLGT medium pass
OBART06G13890.1 Alkaloid 7DLGT medium pass
OBART06G19730.1 Alkaloid 7DLGT low borderline
OBART06G19740.1 Alkaloid 7DLGT low borderline
OBART06G19890.1 Alkaloid 7DLGT low borderline
OBART06G25460.1 Alkaloid 7DLGT medium pass
OBART07G03060.1 Alkaloid 7DLGT low borderline
OBART07G06520.1 Alkaloid 7DLGT low borderline
OBART07G06540.1 Alkaloid 7DLGT low borderline
OBART07G06540.3 Alkaloid 7DLGT low borderline
OBART07G06570.1 Alkaloid 7DLGT low borderline
OBART07G08420.1 Alkaloid 7DLGT medium pass
OBART07G08430.1 Alkaloid 7DLGT low borderline