PlantSME Plant secondary metabolism enzyme database

Oryza glumaepatula (oryza_glumaepatula)

Imported from atlas release summary for Oryza glumaepatula.

1971
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 585 19 BAHD (210) View species results
Alkaloid pathway 460 24 7DLGT (86) View species results
Flavonoid pathway 313 13 UFGT (179) View species results
Phenylpropanoid pathway 312 13 POD (108) View species results
Rosmarinic acid pathway 165 7 C4H (86) View species results
Steroid pathway 136 13 CAS (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2030 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 381 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Oglu11G0016360.1 Flavonoid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH
Oglu12G0003250.1 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Oglu12G0003250.2 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Oglu12G0003250.3 Flavonoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Oglu12G0004910.1 Flavonoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Oglu12G0004910.2 Flavonoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Oglu01G0015950.1 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu01G0016710.1 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Oglu01G0027420.1 Phenylpropanoid 4CL low borderline 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Oglu01G0028560.1 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Oglu01G0030170.1 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Oglu01G0035530.1 Phenylpropanoid 4CL low borderline 4CL__00007__sp_Q42524_4CL1_ARATH
Oglu01G0044420.1 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Oglu01G0044420.2 Phenylpropanoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Oglu01G0044420.3 Phenylpropanoid 4CL low borderline 4CL__00013__sp_Q84P23_4CLL9_ARATH
Oglu01G0044420.4 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Oglu01G0044420.5 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Oglu01G0044420.6 Phenylpropanoid 4CL medium pass 4CL__00013__sp_Q84P23_4CLL9_ARATH
Oglu02G0001300.1 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu02G0005740.1 Phenylpropanoid 4CL medium pass 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Oglu02G0018750.1 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Oglu02G0029150.1 Phenylpropanoid 4CL medium pass 4CL__00008__sp_Q42982_4CL2_ORYSJ
Oglu02G0038510.1 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Oglu03G0002450.1 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu03G0002460.1 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Oglu03G0002570.1 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu03G0002580.1 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu03G0002580.2 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu03G0003910.1 Phenylpropanoid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Oglu03G0014410.1 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu03G0014410.2 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu03G0014410.3 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu03G0040140.1 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Oglu03G0040140.2 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Oglu03G0040140.3 Phenylpropanoid 4CL low borderline 4CL__00012__sp_Q84P21_4CLL5_ARATH
Oglu04G0006980.1 Phenylpropanoid 4CL medium pass 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Oglu04G0010880.1 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Oglu04G0010880.2 Phenylpropanoid 4CL low borderline 4CL__00005__sp_P0C5B6_4CLL4_ARATH
Oglu04G0028940.1 Phenylpropanoid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Oglu04G0029620.1 Phenylpropanoid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Oglu05G0002280.1 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Oglu05G0002280.2 Phenylpropanoid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
Oglu05G0011900.1 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Oglu05G0011900.2 Phenylpropanoid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Oglu06G0003930.1 Phenylpropanoid 4CL low borderline 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ
Oglu06G0024250.1 Phenylpropanoid 4CL medium pass 4CL__00009__sp_Q67W82_4CL4_ORYSJ
Oglu07G0023510.1 Phenylpropanoid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Oglu08G0002010.1 Phenylpropanoid 4CL low borderline 4CL__00017__sp_Q9S725_4CL2_ARATH
Oglu08G0002720.1 Phenylpropanoid 4CL medium pass 4CL__00014__sp_Q84P24_4CLL6_ARATH
Oglu08G0008170.1 Phenylpropanoid 4CL medium pass 4CL__00006__sp_P17814_4CL1_ORYSJ