PlantSME Plant secondary metabolism enzyme database

Oryza glumaepatula (oryza_glumaepatula)

Imported from atlas release summary for Oryza glumaepatula.

1971
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.68% Alkaloid pathway 23.34% Flavonoid pathway 15.88% Phenylpropanoid pathway 15.83% Rosmarinic acid pathway 8.37% Steroid pathway 6.9%
Family Distribution
C4H 6.44% C3'H/CYP98A 6.08% BAHD 5.88% UGT 4.31% 7DLGT 3.98% UFGT 3.79% T3O 3.56% CYP76 3.38%
Other Families 62.58%
More Families (97)
4CL 168 3.23% IFS 160 3.08% F3'H/CYP75B 142 2.73% POD 140 2.69% NMT 122 2.35% BR6OX2/CYP85A2 111 2.13% DWF4/CYP90B1 109 2.1% STR 100 1.92% CYP71 91 1.75% F3H 88 1.69% CAD 79 1.52% SMT1/SMT2/SMT3 77 1.48% CAS 77 1.48% TPS 74 1.42% GES 64 1.23% TRI/TRII 59 1.13% CODM/T6ODM 55 1.06% PYKS 55 1.06% SGD 54 1.04% G8O/G8H 53 1.02% IFR 52 1.0% CCR 52 1.0% COMT 51 0.98% FNS 47 0.9% CSE 47 0.9% T16H 45 0.87% SLS 41 0.79% RAS 41 0.79% PMT 40 0.77% ANR 40 0.77% 16OMT 39 0.75% LAC 38 0.73% CYP90D1 38 0.73% GS 37 0.71% H6H 36 0.69% F5H/CYP84A 35 0.67% HCT 34 0.65% CYP51G1 33 0.63% CHS 32 0.62% NCS 31 0.6% DFR 30 0.58% PAL 27 0.52% F3'5'H/CYP75A 26 0.5% CPD/CYP90A1 26 0.5% BR6OX1/CYP85A1 25 0.48% IO 23 0.44% 8HGO 23 0.44% ANS/LDOX 22 0.42% 7DLH 20 0.38% COR 20 0.38% CNMT 18 0.35% BBE 18 0.35% XMT_MXMT_DXMT 16 0.31% LAMT 15 0.29% FPPS 15 0.29% TAT 14 0.27% CPR 14 0.27% ROT3/CYP90C1 14 0.27% CYP80B1 11 0.21% MVK 11 0.21% GGPPS 10 0.19% CYP719 9 0.17% HPPR 9 0.17% HYD1 9 0.17% SQS/FDFT1 9 0.17% MPO 8 0.15% CCoAOMT 8 0.15% MVD 8 0.15% TYDC_DDC 7 0.13% 6OMT_4OMT_SOMT 7 0.13% AACT 7 0.13% MCT/IspD 7 0.13% CYP80F1 6 0.12% CHI 6 0.12% ISY 5 0.1% ADC 5 0.1% FK 5 0.1% SMO1/SMO2 5 0.1% ODC 4 0.08% DET2 4 0.08% HMGR 4 0.08% PMK 4 0.08% DXS 4 0.08% TDC 3 0.06% FLS 3 0.06% SQE 3 0.06% DWF1 3 0.06% IDI 3 0.06% DWF5 2 0.04% DXR 2 0.04% CMK/IspE 2 0.04% MDS/IspF 2 0.04% HMGS 2 0.04% HDR/IspH 2 0.04% DWF7 1 0.02% CPI1 1 0.02% HDS/IspG 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 585 19 BAHD (210) View species results
Alkaloid pathway 460 24 7DLGT (86) View species results
Flavonoid pathway 313 13 UFGT (179) View species results
Phenylpropanoid pathway 312 13 POD (108) View species results
Rosmarinic acid pathway 165 7 C4H (86) View species results
Steroid pathway 136 13 CAS (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2030 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 381 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SQS/FDFT1
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Gene Pathway Family Confidence Status
Oglu03G0037330.1 Steroid SQS/FDFT1 medium pass
Oglu03G0037330.2 Steroid SQS/FDFT1 medium pass
Oglu06G0000200.1 Steroid SQS/FDFT1 low borderline
Oglu06G0000200.2 Steroid SQS/FDFT1 low borderline
Oglu06G0029160.1 Steroid SQS/FDFT1 medium pass
Oglu07G0006040.1 Steroid SQS/FDFT1 high pass
Oglu08G0019150.1 Steroid SQS/FDFT1 low borderline
Oglu09G0019430.1 Steroid SQS/FDFT1 medium pass
Oglu12G0020830.1 Steroid SQS/FDFT1 medium pass