Oryza glumaepatula (oryza_glumaepatula)
Imported from atlas release summary for Oryza glumaepatula.
1971
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1971
Candidate Genes
C4H
6.44%
C3'H/CYP98A
6.08%
BAHD
5.88%
UGT
4.31%
7DLGT
3.98%
UFGT
3.79%
T3O
3.56%
CYP76
3.38%
Other Families
62.58%
More Families (97)
4CL
168
3.23%
IFS
160
3.08%
F3'H/CYP75B
142
2.73%
POD
140
2.69%
NMT
122
2.35%
BR6OX2/CYP85A2
111
2.13%
DWF4/CYP90B1
109
2.1%
STR
100
1.92%
CYP71
91
1.75%
F3H
88
1.69%
CAD
79
1.52%
SMT1/SMT2/SMT3
77
1.48%
CAS
77
1.48%
TPS
74
1.42%
GES
64
1.23%
TRI/TRII
59
1.13%
CODM/T6ODM
55
1.06%
PYKS
55
1.06%
SGD
54
1.04%
G8O/G8H
53
1.02%
IFR
52
1.0%
CCR
52
1.0%
COMT
51
0.98%
FNS
47
0.9%
CSE
47
0.9%
T16H
45
0.87%
SLS
41
0.79%
RAS
41
0.79%
PMT
40
0.77%
ANR
40
0.77%
16OMT
39
0.75%
LAC
38
0.73%
CYP90D1
38
0.73%
GS
37
0.71%
H6H
36
0.69%
F5H/CYP84A
35
0.67%
HCT
34
0.65%
CYP51G1
33
0.63%
CHS
32
0.62%
NCS
31
0.6%
DFR
30
0.58%
PAL
27
0.52%
F3'5'H/CYP75A
26
0.5%
CPD/CYP90A1
26
0.5%
BR6OX1/CYP85A1
25
0.48%
IO
23
0.44%
8HGO
23
0.44%
ANS/LDOX
22
0.42%
7DLH
20
0.38%
COR
20
0.38%
CNMT
18
0.35%
BBE
18
0.35%
XMT_MXMT_DXMT
16
0.31%
LAMT
15
0.29%
FPPS
15
0.29%
TAT
14
0.27%
CPR
14
0.27%
ROT3/CYP90C1
14
0.27%
CYP80B1
11
0.21%
MVK
11
0.21%
GGPPS
10
0.19%
CYP719
9
0.17%
HPPR
9
0.17%
HYD1
9
0.17%
SQS/FDFT1
9
0.17%
MPO
8
0.15%
CCoAOMT
8
0.15%
MVD
8
0.15%
TYDC_DDC
7
0.13%
6OMT_4OMT_SOMT
7
0.13%
AACT
7
0.13%
MCT/IspD
7
0.13%
CYP80F1
6
0.12%
CHI
6
0.12%
ISY
5
0.1%
ADC
5
0.1%
FK
5
0.1%
SMO1/SMO2
5
0.1%
ODC
4
0.08%
DET2
4
0.08%
HMGR
4
0.08%
PMK
4
0.08%
DXS
4
0.08%
TDC
3
0.06%
FLS
3
0.06%
SQE
3
0.06%
DWF1
3
0.06%
IDI
3
0.06%
DWF5
2
0.04%
DXR
2
0.04%
CMK/IspE
2
0.04%
MDS/IspF
2
0.04%
HMGS
2
0.04%
HDR/IspH
2
0.04%
DWF7
1
0.02%
CPI1
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 585 | 19 | BAHD (210) | View species results |
| Alkaloid pathway | 460 | 24 | 7DLGT (86) | View species results |
| Flavonoid pathway | 313 | 13 | UFGT (179) | View species results |
| Phenylpropanoid pathway | 312 | 13 | POD (108) | View species results |
| Rosmarinic acid pathway | 165 | 7 | C4H (86) | View species results |
| Steroid pathway | 136 | 13 | CAS (53) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2030 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 381 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Oglu01G0019890.1 | Alkaloid | SGD | medium | pass |
| Oglu01G0038400.1 | Alkaloid | SGD | medium | pass |
| Oglu01G0038410.1 | Alkaloid | SGD | medium | pass |
| Oglu01G0038410.2 | Alkaloid | SGD | medium | pass |
| Oglu01G0038410.3 | Alkaloid | SGD | medium | pass |
| Oglu01G0044160.1 | Alkaloid | SGD | medium | pass |
| Oglu01G0046560.1 | Alkaloid | SGD | medium | pass |
| Oglu01G0046560.2 | Alkaloid | SGD | medium | pass |
| Oglu03G0008190.1 | Alkaloid | SGD | medium | pass |
| Oglu03G0030950.1 | Alkaloid | SGD | low | borderline |
| Oglu04G0015450.1 | Alkaloid | SGD | medium | pass |
| Oglu04G0015450.2 | Alkaloid | SGD | medium | pass |
| Oglu04G0015460.1 | Alkaloid | SGD | medium | pass |
| Oglu04G0015480.1 | Alkaloid | SGD | medium | pass |
| Oglu04G0015480.2 | Alkaloid | SGD | medium | pass |
| Oglu04G0015480.3 | Alkaloid | SGD | medium | pass |
| Oglu04G0015500.1 | Alkaloid | SGD | medium | pass |
| Oglu04G0015500.2 | Alkaloid | SGD | medium | pass |
| Oglu04G0015500.3 | Alkaloid | SGD | medium | pass |
| Oglu04G0018300.1 | Alkaloid | SGD | medium | pass |
| Oglu04G0018300.2 | Alkaloid | SGD | medium | pass |
| Oglu04G0018300.3 | Alkaloid | SGD | medium | pass |
| Oglu04G0018300.4 | Alkaloid | SGD | medium | pass |
| Oglu04G0018300.5 | Alkaloid | SGD | medium | pass |
| Oglu04G0018300.6 | Alkaloid | SGD | medium | pass |
| Oglu04G0018300.7 | Alkaloid | SGD | medium | pass |
| Oglu04G0018310.1 | Alkaloid | SGD | medium | pass |
| Oglu05G0007920.1 | Alkaloid | SGD | low | borderline |
| Oglu05G0014290.1 | Alkaloid | SGD | medium | pass |
| Oglu05G0014300.1 | Alkaloid | SGD | low | borderline |
| Oglu05G0014300.2 | Alkaloid | SGD | low | borderline |
| Oglu05G0014300.3 | Alkaloid | SGD | low | borderline |
| Oglu05G0014300.4 | Alkaloid | SGD | low | borderline |
| Oglu05G0014300.5 | Alkaloid | SGD | low | borderline |
| Oglu05G0014320.1 | Alkaloid | SGD | medium | pass |
| Oglu05G0014330.1 | Alkaloid | SGD | medium | pass |
| Oglu06G0013550.1 | Alkaloid | SGD | medium | pass |
| Oglu06G0026030.1 | Alkaloid | SGD | medium | pass |
| Oglu06G0026030.2 | Alkaloid | SGD | medium | pass |
| Oglu06G0026030.3 | Alkaloid | SGD | medium | pass |
| Oglu06G0026030.4 | Alkaloid | SGD | medium | pass |
| Oglu08G0020890.1 | Alkaloid | SGD | medium | pass |
| Oglu09G0015180.1 | Alkaloid | SGD | medium | pass |
| Oglu09G0015200.1 | Alkaloid | SGD | medium | pass |
| Oglu09G0016400.1 | Alkaloid | SGD | medium | pass |
| Oglu09G0016400.2 | Alkaloid | SGD | medium | pass |
| Oglu09G0016420.1 | Alkaloid | SGD | medium | pass |
| Oglu09G0016420.2 | Alkaloid | SGD | medium | pass |
| Oglu09G0016420.3 | Alkaloid | SGD | medium | pass |
| Oglu09G0016440.1 | Alkaloid | SGD | medium | pass |