PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Oruf06G0000630.3 Rosmarinic Acid C4H low borderline
Oruf06G0000630.4 Rosmarinic Acid C4H low borderline
Oruf06G0001790.1 Rosmarinic Acid C4H low borderline
Oruf06G0006060.1 Rosmarinic Acid C4H low borderline
Oruf06G0010610.1 Rosmarinic Acid C4H medium pass
Oruf06G0010700.1 Rosmarinic Acid C4H low borderline
Oruf06G0012010.1 Rosmarinic Acid C4H medium pass
Oruf06G0013710.1 Rosmarinic Acid C4H medium pass
Oruf06G0013850.1 Rosmarinic Acid C4H low borderline
Oruf06G0013960.1 Rosmarinic Acid C4H medium pass
Oruf06G0014890.1 Rosmarinic Acid C4H low borderline
Oruf06G0016670.1 Rosmarinic Acid C4H low borderline
Oruf06G0016890.1 Rosmarinic Acid C4H low borderline
Oruf06G0018480.1 Rosmarinic Acid C4H low borderline
Oruf06G0019570.1 Rosmarinic Acid C4H low borderline
Oruf06G0019810.1 Rosmarinic Acid C4H low borderline
Oruf06G0019810.2 Rosmarinic Acid C4H low borderline
Oruf06G0019830.1 Rosmarinic Acid C4H low borderline
Oruf06G0019860.1 Rosmarinic Acid C4H low borderline
Oruf06G0019860.2 Rosmarinic Acid C4H low borderline
Oruf06G0019880.1 Rosmarinic Acid C4H low borderline
Oruf06G0019880.2 Rosmarinic Acid C4H low borderline
Oruf06G0019880.3 Rosmarinic Acid C4H low borderline
Oruf06G0019880.4 Rosmarinic Acid C4H low borderline
Oruf06G0019890.1 Rosmarinic Acid C4H low borderline
Oruf06G0019890.2 Rosmarinic Acid C4H low borderline
Oruf06G0021280.1 Rosmarinic Acid C4H low borderline
Oruf06G0022190.1 Rosmarinic Acid C4H medium pass
Oruf06G0023170.1 Rosmarinic Acid C4H low borderline
Oruf06G0023710.1 Rosmarinic Acid C4H low borderline
Oruf06G0023720.1 Rosmarinic Acid C4H medium pass
Oruf06G0023740.1 Rosmarinic Acid C4H medium pass
Oruf06G0023750.1 Rosmarinic Acid C4H low borderline
Oruf06G0023760.1 Rosmarinic Acid C4H medium pass
Oruf06G0023770.1 Rosmarinic Acid C4H low borderline
Oruf06G0023770.2 Rosmarinic Acid C4H low borderline
Oruf06G0023780.1 Rosmarinic Acid C4H low borderline
Oruf06G0023780.2 Rosmarinic Acid C4H low borderline
Oruf06G0023800.1 Rosmarinic Acid C4H medium pass
Oruf06G0023800.2 Rosmarinic Acid C4H medium pass
Oruf06G0025860.1 Rosmarinic Acid C4H low borderline
Oruf06G0026450.1 Rosmarinic Acid C4H low borderline
Oruf07G0007320.1 Rosmarinic Acid C4H low borderline
Oruf07G0010630.1 Rosmarinic Acid C4H low borderline
Oruf07G0010640.1 Rosmarinic Acid C4H low borderline
Oruf07G0010660.1 Rosmarinic Acid C4H low borderline
Oruf07G0011820.1 Rosmarinic Acid C4H low borderline
Oruf07G0012950.1 Rosmarinic Acid C4H low borderline
Oruf07G0012980.1 Rosmarinic Acid C4H low borderline
Oruf07G0015100.1 Rosmarinic Acid C4H low borderline