PlantSME Plant secondary metabolism enzyme database

Oryza rufipogon (oryza_rufipogon)

Imported from atlas release summary for Oryza rufipogon.

1852
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 533 19 BAHD (205) View species results
Alkaloid pathway 450 23 7DLGT (73) View species results
Flavonoid pathway 296 14 UFGT (175) View species results
Phenylpropanoid pathway 291 12 POD (92) View species results
Rosmarinic acid pathway 149 7 C4H (69) View species results
Steroid pathway 133 13 SMT1/SMT2/SMT3 (52) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1945 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status
Oruf02G0025880.1 Flavonoid PAL high pass
Oruf02G0025890.1 Flavonoid PAL high pass
Oruf02G0025900.1 Flavonoid PAL high pass
Oruf02G0025910.1 Flavonoid PAL high pass
Oruf04G0020190.1 Flavonoid PAL medium pass
Oruf04G0020220.1 Flavonoid PAL high pass
Oruf04G0020240.1 Flavonoid PAL high pass
Oruf05G0003580.1 Flavonoid PAL low borderline
Oruf05G0018240.1 Flavonoid PAL high pass
Oruf08G0011240.1 Flavonoid PAL low borderline
Oruf11G0025600.1 Flavonoid PAL high pass
Oruf12G0012450.1 Flavonoid PAL medium pass
Oruf12G0015200.1 Flavonoid PAL high pass
Oruf02G0025880.1 Phenylpropanoid PAL high pass
Oruf02G0025890.1 Phenylpropanoid PAL high pass
Oruf02G0025900.1 Phenylpropanoid PAL high pass
Oruf02G0025910.1 Phenylpropanoid PAL high pass
Oruf04G0020190.1 Phenylpropanoid PAL medium pass
Oruf04G0020220.1 Phenylpropanoid PAL high pass
Oruf04G0020240.1 Phenylpropanoid PAL high pass
Oruf05G0003580.1 Phenylpropanoid PAL low borderline
Oruf05G0018240.1 Phenylpropanoid PAL high pass
Oruf08G0011240.1 Phenylpropanoid PAL low borderline
Oruf11G0025600.1 Phenylpropanoid PAL high pass
Oruf12G0012450.1 Phenylpropanoid PAL medium pass
Oruf12G0015200.1 Phenylpropanoid PAL high pass
Oruf02G0025880.1 Rosmarinic Acid PAL high pass
Oruf02G0025890.1 Rosmarinic Acid PAL high pass
Oruf02G0025900.1 Rosmarinic Acid PAL high pass
Oruf02G0025910.1 Rosmarinic Acid PAL high pass
Oruf04G0020190.1 Rosmarinic Acid PAL medium pass
Oruf04G0020220.1 Rosmarinic Acid PAL high pass
Oruf04G0020240.1 Rosmarinic Acid PAL high pass
Oruf05G0003580.1 Rosmarinic Acid PAL low borderline
Oruf05G0018240.1 Rosmarinic Acid PAL high pass
Oruf08G0011240.1 Rosmarinic Acid PAL low borderline
Oruf11G0025600.1 Rosmarinic Acid PAL high pass
Oruf12G0012450.1 Rosmarinic Acid PAL medium pass
Oruf12G0015200.1 Rosmarinic Acid PAL high pass